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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCATTGGGCTTGGGGTTTTACTATTAAAATGGTATAAACTTAGACAGCTTCAGGAGGCTGTGAGCCCTGCAACTACCCCAGCAGTTAATAGAAGATATGgtatgacaatgttcctaattccttctgtagttactatgctatttgtttagtattgcttctattgttctttgctcctcccccccccccccccccgcccgcc...

Basic information

species Oryza sativa
transcript LOC_Os02g57080.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g57080.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G102163_T01 (Zea mays), 5'ss of exon 5
TGCATTGGGCTTGGGGTTTTACTATTAAAATGGTATAAACTTAGACAGCTTCAGGAGGCTGTGAGCCCTGCAACTACCCCAGCAGTTAATAGAAGATATGgtatgacaatgttcctaattccttctgtagttac-tatgctatttg--tttagtattgcttctattgttctttgctcctcccccccccccccccccgcccgcc
||   ||   |   | | |||||| ||| |||| | |||||| ||| |||||| |||| | ||| |||||||||||||||| |||||||||||||||| ||||||    |       ||| ||| | | |  || |||   || |   |   || ||| | | |   || |     ||| |           |          
TGTGCTGTTGTCCTGATCTTACTAGTAAGATGGAAGAAACTTGGACGGCTTCATGAGGATATGAACCCTGCAACTACCCCAACAGTTAATAGAAGATACGgtatggtgtttaatagtattacttttatgggaacatatcgaatgtaaatcacgttttggtgcaaaccttatgaaaacctactaagaagaattctgaaaaa---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88692794|gb|CI736369.1|CI736369
EST:     TCAGGAGGCTGTGAGCCCTGCAACTACCCCAGCAGTTAATAGAAGATATG                         GTGGCAGATCAACTTTGTCTGTTAGCAGGGTGAGCTCTGCATCGGCGTCAA
genomic: TCAGGAGGCTGTGAGCCCTGCAACTACCCCAGCAGTTAATAGAAGATATGgtatgacaat ... tgtaatgtagGTGGCAGATCAACTTTGTCTGTTAGCAGGGTGAGCTCTGCATCGGCGTCAA