1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TATTGAAGTTTCAATGTGGCAGCAAAGAGTCCGCCTTTATATTATAACTGGTGTTAAGGGGGATACTGTTTTTGCGCCTCAAACTAAGAAGGAGATCAGTgtacgcaaatgttcagtgtttttatcatatttctttttgctcaactacattcagaatattttggactcgctatctgaaaacgaaaaggggaattgcgtga...
species | Oryza sativa |
transcript | LOC_Os02g56210.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AACTAAGAAGGAGATCAGT GAGATCTCATGGCATAAAATCGATGAACTCCTTCCTGCTGGTGATGATGCAEST: gi|66916903|gb|CX103751.1|CX103751
genomic: AACTAAGAAGGAGATCAGTgtacgcaaat ... aaattgacagGAGATCTCATGGCACAACATCGATGAACTCCTTCCTGCTGGTGATGACGCA
EST: GTGTTAAGGGGGATACTGTTTTTGCGCCTCAAACTAAGAAGGAGATCAGT GAGATCTCATGGCACAACATCGATGAACTCCTTCCTGCTGGTGATGACGCAEST: gi|25803115|gb|CA759076.1|CA759076
genomic: GTGTTAAGGGGGATACTGTTTTTGCGCCTCAAACTAAGAAGGAGATCAGTgtacgcaaat ... aaattgacagGAGATCTCATGGCACAACATCGATGAACTCCTTCCTGCTGGTGATGACGCA
EST: AAGGGGGATACTGTTTNTGCGCCTCAAACTAAGAAGGAGATCAGT GAGATCTCATGGCATAAAATCGATGAACTCCTTCCTGCTGGTGATGATGCAEST: gi|218484683|gb|FG956662.1|FG956662
genomic: AAGGGGGATACTGTTTTTGCGCCTCAAACTAAGAAGGAGATCAGTgtacgcaaat ... aaattgacagGAGATCTCATGGCACAACATCGATGAACTCCTTCCTGCTGGTGATGACGCA
EST: GTGTTAAGGGGGATACTGTTTTTGCGCCTCAAACTAAGAAGGAGATCAGT GAGATCTCATGGCATAAAATCGATGAACTCCTTCCTGCTGGTGATGATGCAEST: gi|88906305|gb|CI375377.1|CI375377
genomic: GTGTTAAGGGGGATACTGTTTTTGCGCCTCAAACTAAGAAGGAGATCAGTgtacgcaaat ... aaattgacagGAGATCTCATGGCACAACATCGATGAACTCCTTCCTGCTGGTGATGACGCA
EST: GGGGATACTGTTTTTGCCCCTCAAACTAAGAA-GAGATCAGT GAGATCTCATGGCACAACATCGATGAACTCCTTCCTGCTGGTGATGACGCAEST: gi|218481891|gb|FG948637.1|FG948637
genomic: GGGGATACTGTTTTTGCGCCTCAAACTAAGAAGGAGATCAGTgtacgcaaat ... aaattgacagGAGATCTCATGGCACAACATCGATGAACTCCTTCCTGCTGGTGATGACGCA
EST: GTGTTAAGGGGGATACTGTTTTTGCGCCTCAAACTAAGAAGGAGATCAGT GAGATCTCATGGCATAAAATCGATGAACTCCTTCCTGCTGGTGATGATGCA
genomic: GTGTTAAGGGGGATACTGTTTTTGCGCCTCAAACTAAGAAGGAGATCAGTgtacgcaaat ... aaattgacagGAGATCTCATGGCACAACATCGATGAACTCCTTCCTGCTGGTGATGACGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTGAAGTTTCAATGTGGCAGCAAAGAGTCCGCCTTTATATTATAACTGGTGTTAAGGGGGATACTGTTTTTGCGCCTCAAACTAAGAAGGAGATCAGTgtacgcaaatgttcagtgtttttatcatatttctttttgctcaactacattcagaatattttggactcgctatctgaaaacgaaaaggggaattgcgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA