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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGTGGTTGGCCTAGGGGATAAAGTTTCTCCAACTGACATTGAGGAAGGGATGAGAGTGGGgtaggtcactgctgtttttttggtctttgatgtatcatattattctccctgaattctatctcatgcaattcgatctgctgtttccacctttttttgatgc...

Basic information

species Oryza sativa
transcript LOC_Os02g54340.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g54340.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 5
TTTGTGGTTGGCCTAGGGGATAAAGTTTCTCCAACTGACATTGAGGAAGGGATGAGAGTGGGgtaggtcactgctgtttttttggtctttgatgtatcatattattctccctgaattctatctcatgcaattcgatctgctgt-ttccacctttttttgatgc---
||||| ||||| || ||||||||||| |||||||||||||| |||||||||||||| || ||||| | |||  |||| ||||  || |  | | | ||   ||| | |  |  ||| ||   || | || ||| | || | |   |        |||   |||   
TTTGTTGTTGGACTGGGGGATAAAGTGTCTCCAACTGACATCGAGGAAGGGATGAGGGTCGGgtatgccacc-ctgtattttcagtttaagctttctctgtttagtatatc--aatacttagtccttcatttcta-ctacagcactgtgatgcatttatgtgctca

upper sequence: LOC_Os02g54340.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA16G01810.1 (Glycine max), 5'ss of exon 5
TTTGTGGTTGGCCTAGGGGATAAAGTTTCTCCAACTGACATTGAGGAAGGGATGAGAGTGGGgtaggtcactgctgtttt-tttggtctttgatgtatcatattattctccctgaattctatctcatgcaattcgatctgctgtttccacctttttttgatgc------
||||| ||||| ||||| || || ||||| || ||||||||||||||||||||| | || ||||| ||  |   |   |  |||| |    ||    | |||  |         |    |    ||||   |  |  ||  |  ||  |||||  ||| ||        
TTTGTTGTTGGGCTAGGAGACAAGGTTTCCCCCACTGACATTGAGGAAGGGATGCGTGTTGGgtatgtttccaataagtaatttgatgcaagaatatttatagaaagaagaggaaccctttgggcatgttgtctg--cttgtaatttgaccttcattttatcattgcag

upper sequence: LOC_Os02g54340.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA19G45140.1 (Glycine max), 5'ss of exon 5
TTTGTGGTTGGCCTAGGGGATAAAGTTTCTCCAACTGACATTGAGGAAGGGATGAGAGTGGGgtaggtcactgctgtt--tttttggtctttga-tgtatcatattattctccctgaattctatctcatgcaattcgatctgctgtttccacctttttttgatgc----------
||||| ||||| || || ||||||||||| || || |||||||||||||||||| | || ||||| ||  |      |   ||||| | ||  | | |  ||| ||                 |||  ||  || |  ||||||  |   ||     ||   |||          
TTTGTCGTTGGGCTGGGTGATAAAGTTTCACCTACCGACATTGAGGAAGGGATGCGTGTTGGgtatgttccaatcagtaacttttgatgttaaaatattccatgttgagagaagaaggggtattctagtgttatgctgtctgcttgtctgactgaacttcattgcatcatttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58603359|gb|CK013887.1|CK013887
EST:     CTAGGGGATAAAGTTTCTCCAACTGACATTGAGGAAGGGATGAGAGTGGG                         TGTTGATCGGAACAAGTACCAGATTCAAATTCCTTTGCCACCCAAAATTGA
genomic: CTAGGGGATAAAGTTTCTCCAACTGACATTGAGGAAGGGATGAGAGTGGGgtaggtcact ... tttaatgcagTGTTGATCGGAACAAGTACCAGATTCAAATTCCTTTGCCACCCAAAATTGA
EST: gi|29684844|gb|CB681119.1|CB681119
EST:     CTAGGGGATAAAGTTTCTCCAACTGACATTGAGGAAGGGATGAGAGTGGG                         TGTTGATCGGAACAAGTACCAGATTCAAATTCCTTTGCCACCCAAAATTGA
genomic: CTAGGGGATAAAGTTTCTCCAACTGACATTGAGGAAGGGATGAGAGTGGGgtaggtcact ... tttaatgcagTGTTGATCGGAACAAGTACCAGATTCAAATTCCTTTGCCACCCAAAATTGA
EST: gi|58685776|gb|CK074463.1|CK074463
EST:     CTAGGGGATAAAGTTTCTCCAACTGACATTGAGGAAGGGATGAGAGTGGG                         TGTTGATCGGAACAAGTACCAGATTCAAATTCCTTTGCCACCCAAAATTGA
genomic: CTAGGGGATAAAGTTTCTCCAACTGACATTGAGGAAGGGATGAGAGTGGGgtaggtcact ... tttaatgcagTGTTGATCGGAACAAGTACCAGATTCAAATTCCTTTGCCACCCAAAATTGA
EST: gi|58602175|gb|CK012703.1|CK012703
EST:     CTAGGGGATCAAGTTTCTCCAACTGACATTGAGGAAGGGATGAGAGTGGG                         TGTTGATCGGAACAAGTACCAGATTCAAATTCCTTTGCC
genomic: CTAGGGGATAAAGTTTCTCCAACTGACATTGAGGAAGGGATGAGAGTGGGgtaggtcact ... tttaatgcagTGTTGATCGGAACAAGTACCAGATTCAAATTCCTTTGCC
EST: gi|58675342|gb|CK064029.1|CK064029
EST:     CTAGGGGATAAAGTTTCTCCAACTGACATTGAGGAAGGGATGAGAGTGGG                         TGTTGATCGGAACAAGTACCAGATTCAAATTCCTTTGCCACCCAAAATTGA
genomic: CTAGGGGATAAAGTTTCTCCAACTGACATTGAGGAAGGGATGAGAGTGGGgtaggtcact ... tttaatgcagTGTTGATCGGAACAAGTACCAGATTCAAATTCCTTTGCCACCCAAAATTGA