1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CATGGTTGTCATGGTGCAGGAATGAGAACAATAACAAGACAAATTGGGCTTGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAGgtatgccattgttgtatcttcattagaagacatcttctggttgagtttgcctaatgattaatttgtccag
species | Oryza sativa |
transcript | LOC_Os02g43930.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAG GTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAGEST: gi|58661241|gb|CK049921.1|CK049921
genomic: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAGgtatgccatt ... atttgtccagGTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAG
EST: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAG GTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAGEST: gi|29665502|gb|CB661777.1|CB661777
genomic: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAGgtatgccatt ... atttgtccagGTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAG
EST: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAG GTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAGEST: gi|58677822|gb|CK066509.1|CK066509
genomic: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAGgtatgccatt ... atttgtccagGTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAG
EST: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAG GTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAGEST: gi|218503180|gb|FG945924.1|FG945924
genomic: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAGgtatgccatt ... atttgtccagGTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAG
EST: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAG GTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAGEST: gi|396941261|gb|HO188470.1|HO188470
genomic: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAGgtatgccatt ... atttgtccagGTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAG
EST: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAG GTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAGEST: gi|58667485|gb|CK056171.1|CK056171
genomic: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAGgtatgccatt ... atttgtccagGTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAG
EST: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAG GTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAGEST: gi|218484817|gb|FG946762.1|FG946762
genomic: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAGgtatgccatt ... atttgtccagGTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAG
EST: CCTGAATGCAGAGGATCAG GTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAGEST: gi|58603501|gb|CK014029.1|CK014029
genomic: CCTGAATGCAGAGGATCAGgtatgccatt ... atttgtccagGTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAG
EST: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAG GTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAGEST: gi|218485257|gb|FG950272.1|FG950272
genomic: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAGgtatgccatt ... atttgtccagGTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAG
EST: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAG GTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAGEST: gi|33797209|gb|CF324468.1|CF324468
genomic: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAGgtatgccatt ... atttgtccagGTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAG
EST: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAG GTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAGEST: gi|58597866|gb|CK008394.1|CK008394
genomic: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAGgtatgccatt ... atttgtccagGTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAG
EST: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAG GTGAGATGATAAGTGACAAGGAEST: gi|29627563|gb|CB632574.1|CB632574
genomic: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAGgtatgccatt ... atttgtccagGTGAGATGATAAGTGACAAGGA
EST: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAC GTGAGATGATAAGTGACAEST: gi|218489299|gb|FG965759.1|FG965759
genomic: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAGgtatgccatt ... atttgtccagGTGAGATGATAAGTGACA
EST: TGGCATGATCCAACAGATGAACACTGTATGCCCTGAATGCAGAGGATCAG GTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGACACACAGEST: gi|58695486|gb|CK084173.1|CK084173
genomic: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAGgtatgccatt ... atttgtccagGTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAG
EST: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAG GTGAGATGATAAGTGACAAGGATAAATGCCCGEST: gi|218482248|gb|FG968976.1|FG968976
genomic: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAGgtatgccatt ... atttgtccagGTGAGATGATAAGTGACAAGGATAAATGCCCG
EST: AACACTGTTTGCCCTGNAATGCAGAGGATCAG GTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAGEST: gi|58604823|gb|CK015351.1|CK015351
genomic: AACACTGTTTGCCCTG-AATGCAGAGGATCAGgtatgccatt ... atttgtccagGTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAG
EST: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAG GTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAGEST: gi|29619928|gb|CB624940.1|CB624940
genomic: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAGgtatgccatt ... atttgtccagGTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAG
EST: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAG GTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAGEST: gi|13420811|gb|AU174901.1|AU174901
genomic: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAGgtatgccatt ... atttgtccagGTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAG
EST: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAG GTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAGEST: gi|27576325|gb|CA999019.1|CA999019
genomic: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAGgtatgccatt ... atttgtccagGTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAG
EST: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAG GTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAGEST: gi|29686472|gb|CB682747.1|CB682747
genomic: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAGgtatgccatt ... atttgtccagGTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAG
EST: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAG GTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAGEST: gi|116875639|gb|EC366147.1|EC366147
genomic: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAGgtatgccatt ... atttgtccagGTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAG
EST: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAG GTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAGEST: gi|29683463|gb|CB679738.1|CB679738
genomic: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAGgtatgccatt ... atttgtccagGTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAG
EST: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAG GTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAGEST: gi|3763799|gb|AU030551.1|AU030551
genomic: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAGgtatgccatt ... atttgtccagGTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAG
EST: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAG GTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAGEST: gi|218499207|gb|FG956931.1|FG956931
genomic: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAGgtatgccatt ... atttgtccagGTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAG
EST: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAG GTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAG
genomic: TGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAGgtatgccatt ... atttgtccagGTGAGATGATAAGTGACAAGGATAAATGCCCGAGTTGTAAGGGAAACAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGGTTGTCATGGTGCAGGAATGAGAACAATAACAAGACAAATTGGGCTTGGCATGATCCAACAGATGAACACTGTTTGCCCTGAATGCAGAGGATCAGgtatgccattgttgtatcttcattagaagacatcttctggttgagtttgcctaatgattaatttgtccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT