1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTCAGGCTTGGGCTGAGGGTTGCCCCAGGGTCTTTTGAAGGTATTCGTGTTAGGGAGGCGAAGACAGAAGCTTTTACTGTTAAGGATCACAGAGGGGAATgtatgtttgcaatgagttattgttttactcatactgctagatgatttgaatgttactcgttaaccatatttctattgtatcttgcag
species | Oryza sativa |
transcript | LOC_Os02g35470.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TAGGGAGGCGAAGACAGAAGCTTTTACTGTTAAGGATCACAGAGGGGAAT TGTACAAAAAGCACTATCCACCTGCCCTAAAGGATGATGTTTGGAGATTAGEST: gi|86877077|gb|CI311412.1|CI311412
genomic: TAGGGAGGCGAAGACAGAAGCTTTTACTGTTAAGGATCACAGAGGGGAATgtatgtttgc ... tatcttgcagTGTACAAAAAGCACTATCCACCTGCCCTAAAGGATGATGTTTGGAGATTAG
EST: TAGGGAGGCGAAGACAGAAGCTTTTACTGTTAAGGATCACAGAGGGGAAT TGTACAAAAAGCACTATCCACCTGCCCTAAAGGGTGATGTTTGGAGATTAGEST: gi|29675099|gb|CB671374.1|CB671374
genomic: TAGGGAGGCGAAGACAGAAGCTTTTACTGTTAAGGATCACAGAGGGGAATgtatgtttgc ... tatcttgcagTGTACAAAAAGCACTATCCACCTGCCCTAAAGGATGATGTTTGGAGATTAG
EST: TAGGGAGGCGAAGACAGAAGCTTTTACTGTTAAGGATCACAGAGGGGAAT TGTACAAAAAGCACTATCCACCTGCCCTAAAGGATGATGTTTEST: gi|29674900|gb|CB671175.1|CB671175
genomic: TAGGGAGGCGAAGACAGAAGCTTTTACTGTTAAGGATCACAGAGGGGAATgtatgtttgc ... tatcttgcagTGTACAAAAAGCACTATCCACCTGCCCTAAAGGATGATGTTT
EST: TAGGGAGGCGAAGACAGAAGCTTTTACTGTTAAGGATCACAGAGGGGAAT TGTACAAAAAGCACTATCCACCTGCCCTAAAGGATGATGTTTGGAGATTAGEST: gi|29677880|gb|CB674155.1|CB674155
genomic: TAGGGAGGCGAAGACAGAAGCTTTTACTGTTAAGGATCACAGAGGGGAATgtatgtttgc ... tatcttgcagTGTACAAAAAGCACTATCCACCTGCCCTAAAGGATGATGTTTGGAGATTAG
EST: TAGGGAGGCGAAGACAGAAGCTTTTACTGTTAAGGATCACAGAGGGGAAT TGTACAAAAAGCACTATCCACCTGCCCTANAGGATGATGTTTGGEST: gi|58677698|gb|CK066385.1|CK066385
genomic: TAGGGAGGCGAAGACAGAAGCTTTTACTGTTAAGGATCACAGAGGGGAATgtatgtttgc ... tatcttgcagTGTACAAAAAGCACTATCCACCTGCCCTAAAGGATGATGTTTGG
EST: TAGGGAGGCGAAGACAGAAGCTTTTACTGTTAAGGATCACAGAGGGGAAT TGTACAAAAAGCACTATCCACCTGCCCTAAAGGATGATGTTTGGAGATTAGEST: gi|29628697|gb|CB633708.1|CB633708
genomic: TAGGGAGGCGAAGACAGAAGCTTTTACTGTTAAGGATCACAGAGGGGAATgtatgtttgc ... tatcttgcagTGTACAAAAAGCACTATCCACCTGCCCTAAAGGATGATGTTTGGAGATTAG
EST: TAGGGAGGCGAAGACAGAAGCTTTTACTGTTAAGGATCACAGAGGGGAAT TGTACAAAAAGCACTATCCACCTGCCCTAAAGGATGATGTTTGGAGATTAGEST: gi|29630082|gb|CB635091.1|CB635091
genomic: TAGGGAGGCGAAGACAGAAGCTTTTACTGTTAAGGATCACAGAGGGGAATgtatgtttgc ... tatcttgcagTGTACAAAAAGCACTATCCACCTGCCCTAAAGGATGATGTTTGGAGATTAG
EST: TAGGGAGGCGAAGACAGAAGCTTTTACTGTTAAGGATCACAGAGGGGAAT TGTACAAAAAGCACTATCCACCTGCCCTAAAGGATGATGTTTGGAGEST: gi|29680200|gb|CB676475.1|CB676475
genomic: TAGGGAGGCGAAGACAGAAGCTTTTACTGTTAAGGATCACAGAGGGGAATgtatgtttgc ... tatcttgcagTGTACAAAAAGCACTATCCACCTGCCCTAAAGGATGATGTTTGGAG
EST: TAGGGAGGCGAAGACAGAAGCTTTTACTGTTAAGGATCACAGAGGGGAAT TGTACAAAAAGCACTATCCACCTGCCCTAAAGGATGATGTTTGGAGATTAGEST: gi|66924740|gb|CX111588.1|CX111588
genomic: TAGGGAGGCGAAGACAGAAGCTTTTACTGTTAAGGATCACAGAGGGGAATgtatgtttgc ... tatcttgcagTGTACAAAAAGCACTATCCACCTGCCCTAAAGGATGATGTTTGGAGATTAG
EST: TAGGGAGGCGAAGACAGAAGCTTTTACTGTTAAGGATCACAGAGGGGAAT TGTACAAAAAGCACTATCCACCTGCCCTAAAGGATGATGTTTGGAGATTAGEST: gi|33796937|gb|CF324332.1|CF324332
genomic: TAGGGAGGCGAAGACAGAAGCTTTTACTGTTAAGGATCACAGAGGGGAATgtatgtttgc ... tatcttgcagTGTACAAAAAGCACTATCCACCTGCCCTAAAGGATGATGTTTGGAGATTAG
EST: TAGGGAGGCGAAGACAGAAGCTTTTACTGTTAAGGATCACAGAGGGGAAT TGTACAAAAAGCACTATCCACCTGCCCTAAAGGATGATGTTTGGAGATTAGEST: gi|29626070|gb|CB631081.1|CB631081
genomic: TAGGGAGGCGAAGACAGAAGCTTTTACTGTTAAGGATCACAGAGGGGAATgtatgtttgc ... tatcttgcagTGTACAAAAAGCACTATCCACCTGCCCTAAAGGATGATGTTTGGAGATTAG
EST: TAGGGAGGCGAAGACAGAAGCTTTTACTGTTAAGGATCACAGAGGGGAAT TGTACAAAAAGCACTATCCACCTGCCCTAAAGGATGATGTTTGGAGATTAGEST: gi|33675030|gb|CF303269.1|CF303269
genomic: TAGGGAGGCGAAGACAGAAGCTTTTACTGTTAAGGATCACAGAGGGGAATgtatgtttgc ... tatcttgcagTGTACAAAAAGCACTATCCACCTGCCCTAAAGGATGATGTTTGGAGATTAG
EST: TAGGGAGGCGAAGACAGAAGCTTTTACTGTTAAGGATCACAGAGGGGAAT TGTACAAAAAGCACTATCCACCTGCCCTAAAGGATGATGTTTGGAGATTAGEST: gi|29629686|gb|CB634695.1|CB634695
genomic: TAGGGAGGCGAAGACAGAAGCTTTTACTGTTAAGGATCACAGAGGGGAATgtatgtttgc ... tatcttgcagTGTACAAAAAGCACTATCCACCTGCCCTAAAGGATGATGTTTGGAGATTAG
EST: TAGGGAGGCGAAGACAGAAGCTTTTACTGTTAAGGATCACAGAGGGGAAT TGTACAAAAAGCACTATCCACCTGCCCTAAAEST: gi|33380769|gb|CF196112.1|CF196112
genomic: TAGGGAGGCGAAGACAGAAGCTTTTACTGTTAAGGATCACAGAGGGGAATgtatgtttgc ... tatcttgcagTGTACAAAAAGCACTATCCACCTGCCCTAAA
EST: TAGGGAGGCGAAGACAGAAGCTTTTACTGTTAAGGATCACAGAGGGGAAT TGTACAAAAAGCACTATCCACCTGCCCTAAAGGATGATGTTTGGAGATTAG
genomic: TAGGGAGGCGAAGACAGAAGCTTTTACTGTTAAGGATCACAGAGGGGAATgtatgtttgc ... tatcttgcagTGTACAAAAAGCACTATCCACCTGCCCTAAAGGATGATGTTTGGAGATTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCAGGCTTGGGCTGAGGGTTGCCCCAGGGTCTTTTGAAGGTATTCGTGTTAGGGAGGCGAAGACAGAAGCTTTTACTGTTAAGGATCACAGAGGGGAATgtatgtttgcaatgagttattgttttactcatactgctagatgatttgaatgttactcgttaaccatatttctattgtatcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC