1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GAATGGTGAACATCTATACCGGGAACAGCCTTCGAGAACTCTTTTTGTTCGAAACATTAATAGTAATGTTGAGGACTCTGAATTGAAGCTCCTATTTGAGgttagttacttatttcttcttctttgaatcactcttctgttacaacagatttgacatctgagaagccatctgttcttctatgcag
species | Oryza sativa |
transcript | LOC_Os02g31290.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAAACATTAATAGTAATGTTGAGGACTCTGAATTGAAGCTCCTATTTGAG CATTTCGGAGATATCCGTGCCCTTTATACTGCCTGTAAACATCGTGGTTTTEST: gi|29628253|gb|CB633264.1|CB633264
genomic: GAAACATTAATAGTAATGTTGAGGACTCTGAATTGAAGCTCCTATTTGAGgttagttact ... ttctatgcagCATTTCGGAGATATCCGTGCCCTTTATACTGCCTGTAAACATCGTGGTTTT
EST: GAAACATTAATAGTAATGTTGAGGACTCTGAATTGAAGCTCCTATTTGAG CATTTCGGAGATATCCGTGCCCTTTATACTGCCTGTAAACATCGTGGTTTTEST: gi|29629461|gb|CB634470.1|CB634470
genomic: GAAACATTAATAGTAATGTTGAGGACTCTGAATTGAAGCTCCTATTTGAGgttagttact ... ttctatgcagCATTTCGGAGATATCCGTGCCCTTTATACTGCCTGTAAACATCGTGGTTTT
EST: GAAACATTAATAGTAATGTTGAGGACTCTGAATTGAAGCTCCTATTTGAG CATTTCGGAGATATCCGTGCCCTTTATACTGCCTGTAAACATCGTGGTTTTEST: gi|58605539|gb|CK033572.1|CK033572
genomic: GAAACATTAATAGTAATGTTGAGGACTCTGAATTGAAGCTCCTATTTGAGgttagttact ... ttctatgcagCATTTCGGAGATATCCGTGCCCTTTATACTGCCTGTAAACATCGTGGTTTT
EST: CTGAATTTG-AGCT-CTATTTGAG CATTTCGGAGATAT-CGTGCCCTTTATACTGCCTGTAAACATCGTGGTTTT
genomic: CTGAA-TTGAAGCTCCTATTTGAGgttagttact ... ttctatgcagCATTTCGGAGATATCCGTGCCCTTTATACTGCCTGTAAACATCGTGGTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATGGTGAACATCTATACCGGGAACAGCCTTCGAGAACTCTTTTTGTTCGAAACATTAATAGTAATGTTGAGGACTCTGAATTGAAGCTCCTATTTGAGgttagttacttatttcttcttctttgaatcactcttctgttacaacagatttgacatctgagaagccatctgttcttctatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC