1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ACTGACAGACTTAACCATTAGGCACATTGTGCAGAACTGCAAGCACATAGTCGACCTGAACTTGAGTGGTTGTAAGgtaatgtctttgtctgcatttcccagttgacagtatgttttgttccatattttccttgatcaagccggcatctagggagaagctagatgtactttgctat...
species | Oryza sativa |
transcript | LOC_Os02g17990.4 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTGTGCAGAACTGCAAGCACATAGTCGACCTGAACTTGAGTGGTTGTAAG AATATCTCAGATAAAGGTATGCAGCTAGTTGCTGATAATTATGAAGGACTAEST: gi|29668215|gb|CB664490.1|CB664490
genomic: TTGTGCAGAACTGCAAGCACATAGTCGACCTGAACTTGAGTGGTTGTAAGgtaatgtctt ... atgattgcagAATATCTCAGATAAAGGTATGCAGCTAGTTGCTGATAATTATGAAGGACTA
EST: TGTGCAGAACTGCAAGCACATAGTCGACCTGAACTTGAGTGGTTGTAAG AATATCTCAGATAAAGGTATGCAGCTAGTTGCTGATAATTATGAAGGACTAEST: gi|29668174|gb|CB664449.1|CB664449
genomic: TGTGCAGAACTGCAAGCACATAGTCGACCTGAACTTGAGTGGTTGTAAGgtaatgtctt ... atgattgcagAATATCTCAGATAAAGGTATGCAGCTAGTTGCTGATAATTATGAAGGACTA
EST: TTGTGCAGAACTGCAAGCACATAGTCGACCTGAACTTGAGTGGTTGTAAG AATATCTCAGATAAAGGTATGCAGCTAGTTGCTGATAATTATGAAGGACTAEST: gi|29668175|gb|CB664450.1|CB664450
genomic: TTGTGCAGAACTGCAAGCACATAGTCGACCTGAACTTGAGTGGTTGTAAGgtaatgtctt ... atgattgcagAATATCTCAGATAAAGGTATGCAGCTAGTTGCTGATAATTATGAAGGACTA
EST: TTGTGCAGAACTGCAAGCACATAGTCGACCTGAACTTGAGTGGTTGTAAG AATATCTCAGATAAAGGTATGCAGCTAGTTGCTGATAATTATGAAGGACTA
genomic: TTGTGCAGAACTGCAAGCACATAGTCGACCTGAACTTGAGTGGTTGTAAGgtaatgtctt ... atgattgcagAATATCTCAGATAAAGGTATGCAGCTAGTTGCTGATAATTATGAAGGACTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTGACAGACTTAACCATTAGGCACATTGTGCAGAACTGCAAGCACATAGTCGACCTGAACTTGAGTGGTTGTAAGgtaatgtctttgtctgcatttcccagttgacagtatgttttgttccatattttccttgatcaagccggcatctagggagaagctagatgtactttgctat
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