1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AACCCAGCTTAAGTGTGCAACACCCAGAGGAAAATAAGCAAGTTGCACCTGCTGAACTGTGCCCGATCTTGAAGAGGCTCTATAGAATACTAATAAAAAGgtctgtgctctgttttaccaatatggctatggtgctctgggctccttcaactatgtacagtatgcacgaggaatgcagttcacaacttcacatccttcac...
species | Oryza sativa |
transcript | LOC_Os01g71280.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCTGAACTGTGCCCGATCTTGAAGAGGCTCTATAGAATACTAATAAAAAG GGAGCTCTCGACAAGAGATATTCTGCAAGCCCTGAGAGATGAAACCATGAAEST: gi|5056121|gb|AU075500.1|AU075500
genomic: GCTGAACTGTGCCCGATCTTGAAGAGGCTCTATAGAATACTAATAAAAAGgtctgtgctc ... tgatctacagGGAGCTCTCGACAAGAGATATTCTGCAAGCCCTGAGAGATGAAACCATGAA
EST: GCTGAACTGTGCCCGATCTTGAAGAGGCTCTATAGAATACTAATAAAAAG GGAGCTCTCGACAAGAGATATTCTGCAAGCCCTGAGAGATGAAACCATGAAEST: gi|86495999|gb|CI138632.1|CI138632
genomic: GCTGAACTGTGCCCGATCTTGAAGAGGCTCTATAGAATACTAATAAAAAGgtctgtgctc ... tgatctacagGGAGCTCTCGACAAGAGATATTCTGCAAGCCCTGAGAGATGAAACCATGAA
EST: GCTGAACTGTGCCCGATCTTGAAGAGGCTCTATAGAATACTAATAAAAAG GGAGCTCTCGACAAGAGATATTCTGCAAGCCCTGAGAGATGAAACCATGAAEST: gi|89170602|gb|CI039879.1|CI039879
genomic: GCTGAACTGTGCCCGATCTTGAAGAGGCTCTATAGAATACTAATAAAAAGgtctgtgctc ... tgatctacagGGAGCTCTCGACAAGAGATATTCTGCAAGCCCTGAGAGATGAAACCATGAA
EST: GCTGAACTGTGCCCGATCTTGAAGAGGCTCTATAGAATACTAATAAAAAG GGAGCTCTCGACAAGAGATATTCTGCAAGCCCTGAGAGATGAAACCATGAAEST: gi|86838575|gb|CI329082.1|CI329082
genomic: GCTGAACTGTGCCCGATCTTGAAGAGGCTCTATAGAATACTAATAAAAAGgtctgtgctc ... tgatctacagGGAGCTCTCGACAAGAGATATTCTGCAAGCCCTGAGAGATGAAACCATGAA
EST: GCTGAACTGTGCCCGATCTTGAAGAGGCTCTATAGAATACTAATAAAAAG GGAGCTCTCGACAAGAGATATTCTGCAAGCCCTGAGAGATGAAACCATGAAEST: gi|29623740|gb|CB628751.1|CB628751
genomic: GCTGAACTGTGCCCGATCTTGAAGAGGCTCTATAGAATACTAATAAAAAGgtctgtgctc ... tgatctacagGGAGCTCTCGACAAGAGATATTCTGCAAGCCCTGAGAGATGAAACCATGAA
EST: GCTGAACTGTGCCCGATCTTGAAGAGGCTTTATAGAATACTAATAAAAAG GGAGCTCTCGACAAGAGATATTCTGCAAGCCCTGAGAGATGAAACCATGAAEST: gi|88273445|gb|CI393851.1|CI393851
genomic: GCTGAACTGTGCCCGATCTTGAAGAGGCTCTATAGAATACTAATAAAAAGgtctgtgctc ... tgatctacagGGAGCTCTCGACAAGAGATATTCTGCAAGCCCTGAGAGATGAAACCATGAA
EST: GCTGAACTGTGCCCGATCTTGAAGAGGCTCTATAGAATACTAATAAAAAG GGAGCTCTCGACAAGAGATATTCTGCAAGCCCTGAGAGATGAAACCATGAAEST: gi|86433177|gb|CI093520.1|CI093520
genomic: GCTGAACTGTGCCCGATCTTGAAGAGGCTCTATAGAATACTAATAAAAAGgtctgtgctc ... tgatctacagGGAGCTCTCGACAAGAGATATTCTGCAAGCCCTGAGAGATGAAACCATGAA
EST: GCTGAACTGTGCCCGATCTTGAAGAGGCTCTATAGAATACTAATAAAAAG GGAGCTCTCGACAAGAGATATTCTGCAAGCCCTGAGAGATGAAACCATGAAEST: gi|86833392|gb|CI336181.1|CI336181
genomic: GCTGAACTGTGCCCGATCTTGAAGAGGCTCTATAGAATACTAATAAAAAGgtctgtgctc ... tgatctacagGGAGCTCTCGACAAGAGATATTCTGCAAGCCCTGAGAGATGAAACCATGAA
EST: GCTGAACTGTGCCCGATCTTGAAGAGGCTCTATAGAATACTAATAAAAAG GGAGCTCTCGACAAGAGATATTCTGCAAGCCCTGAGAGATGAAACCATGAAEST: gi|88262419|gb|CI366193.1|CI366193
genomic: GCTGAACTGTGCCCGATCTTGAAGAGGCTCTATAGAATACTAATAAAAAGgtctgtgctc ... tgatctacagGGAGCTCTCGACAAGAGATATTCTGCAAGCCCTGAGAGATGAAACCATGAA
EST: GCTGAACTGTGCCCGATCTTGAAGAGGCTCTATAGAATACTAATAAAAAG GGAGCTCTCGACAAGAGATATTCTGCAAGCCCTGAGAGATGAAACCATGAAEST: gi|87007411|gb|CI279082.1|CI279082
genomic: GCTGAACTGTGCCCGATCTTGAAGAGGCTCTATAGAATACTAATAAAAAGgtctgtgctc ... tgatctacagGGAGCTCTCGACAAGAGATATTCTGCAAGCCCTGAGAGATGAAACCATGAA
EST: GCTGAACTGTGCCCGATCTTGAAGAGGCTCTATAGAATACTAATAAAAAG GGAGCTCTCGACAAGAGATATTCTGCAAGCCCTGAGAGATGAAACCATGAA
genomic: GCTGAACTGTGCCCGATCTTGAAGAGGCTCTATAGAATACTAATAAAAAGgtctgtgctc ... tgatctacagGGAGCTCTCGACAAGAGATATTCTGCAAGCCCTGAGAGATGAAACCATGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACCCAGCTTAAGTGTGCAACACCCAGAGGAAAATAAGCAAGTTGCACCTGCTGAACTGTGCCCGATCTTGAAGAGGCTCTATAGAATACTAATAAAAAGgtctgtgctctgttttaccaatatggctatggtgctctgggctccttcaactatgtacagtatgcacgaggaatgcagttcacaacttcacatccttcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccttc