1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCCAGATGAAGAAGCTGGGGAACTACCAATGGCTTTCATAGTAAGGCAACCAGGTTCAAATATTACCAAGGAACAAGTCATGGATTATGTCGCAAAACAGgtatggtctctctttttagtgatctgaatgttgcattctacgtacctgataaatttgcatatcttttaaggtgcctgtcataatcatctttgtttttttt...
species | Oryza sativa |
transcript | LOC_Os01g67530.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAGGTTCAAATATTACCAAGGAACAAGTCATGGATTATGTCGCAAAACAG GTTGCGCCATACAAGAAGGTGCGACGAGTGGCTTTTGTCACTGCAATACCAEST: gi|18387050|gb|BM420248.1|BM420248
genomic: CAGGTTCAAATATTACCAAGGAACAAGTCATGGATTATGTCGCAAAACAGgtatggtctc ... cattcgacagGTTGCGCCATACAAGAAGGTGCGACGAGTGGCTTTTGTCACTGCAATACCA
EST: CAGGTTCAAATATTACCAAGGAACAAGTCATGGATTATGTCGCAAA-CAG GTTGCGCCATACAAGAAGGTGCGACGAGTGGCTTTTGTCACTGCAATACCAEST: gi|58602126|gb|CK012654.1|CK012654
genomic: CAGGTTCAAATATTACCAAGGAACAAGTCATGGATTATGTCGCAAAACAGgtatggtctc ... cattcgacagGTTGCGCCATACAAGAAGGTGCGACGAGTGGCTTTTGTCACTGCAATACCA
EST: AGGTTCAAATATTACCAAGGAACAAAGTCATGGATTATGTCGCAAAACAG TTTGCGCCATACAAGAAGGTGCGACGAGTGGCTTTTGTCACTGCAATACCAEST: gi|15008726|gb|AU223114.1|AU223114
genomic: AGGTTCAAATATTACCAAGGAAC-AAGTCATGGATTATGTCGCAAAACAGgtatggtctc ... cattcgacagGTTGCGCCATACAAGAAGGTGCGACGAGTGGCTTTTGTCACTGCAATACCA
EST: CAGGTTCAAATATTACCAAGGAACAAGTCATGGATTATGTCGCAAAACAG GTTGCGCCATACAAGAAGGTGCGACGAGTGGCTTTTGTCACTGCAATACCAEST: gi|88517998|gb|CI445551.1|CI445551
genomic: CAGGTTCAAATATTACCAAGGAACAAGTCATGGATTATGTCGCAAAACAGgtatggtctc ... cattcgacagGTTGCGCCATACAAGAAGGTGCGACGAGTGGCTTTTGTCACTGCAATACCA
EST: TCATGGATTATGTCGCAAAACAG GTTGGGCCATACAAGAAGGTGCGACGAGTGGCTTTGGTCACTGCAATACCA
genomic: TCATGGATTATGTCGCAAAACAGgtatggtctc ... cattcgacagGTTGCGCCATACAAGAAGGTGCGACGAGTGGCTTTTGTCACTGCAATACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCAGATGAAGAAGCTGGGGAACTACCAATGGCTTTCATAGTAAGGCAACCAGGTTCAAATATTACCAAGGAACAAGTCATGGATTATGTCGCAAAACAGgtatggtctctctttttagtgatctgaatgttgcattctacgtacctgataaatttgcatatcttttaaggtgcctgtcataatcatctttgtttttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA