1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTCCTTGTTTACGACATCAAATACACAAGGAACAATTGTGGACTCAGGAACAACTTTAGCATATCTTGCAGATGGGGCATATGATCCATTTGTTAATGCGgtgagcttcatagggcccacttatagttctattttctggaattccccatatatgataagcctacgatagtaattaatcttgttacatgattgttagtcctcatattttgtttttgcag
species | Oryza sativa |
transcript | LOC_Os01g56930.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAACTTTAGCATATCTTGCAGATGGGGCATATGATCCATTTGTTAATGCG ATAACTGCTGCAGTCTCTCCATCTGTGCGCTCTCTTGTCAGCAAGGGGAACEST: gi|218481473|gb|FG966098.1|FG966098
genomic: CAACTTTAGCATATCTTGCAGATGGGGCATATGATCCATTTGTTAATGCGgtgagcttca ... gtttttgcagATAACTGCTGCAGTCTCTCCATCTGTGCGCTCTCTTGTCAGCAAGGGGAAC
EST: CAACTTTAGCATATCTTGCAGATGGGGCATATCATCCATTTGTTAATGCG ATAACTGCTGCAGTCTCTCCATCTGTGCGCTCTCTTGTCAGCAAGGGGAACEST: gi|29671199|gb|CB667474.1|CB667474
genomic: CAACTTTAGCATATCTTGCAGATGGGGCATATGATCCATTTGTTAATGCGgtgagcttca ... gtttttgcagATAACTGCTGCAGTCTCTCCATCTGTGCGCTCTCTTGTCAGCAAGGGGAAC
EST: CAACTTTAGCATATCTTGCAGATGGGGCATATGATCCATTTGNTAATGCG ATAACTGCTGCAGTCTCTCCATCT
genomic: CAACTTTAGCATATCTTGCAGATGGGGCATATGATCCATTTGTTAATGCGgtgagcttca ... gtttttgcagATAACTGCTGCAGTCTCTCCATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCCTTGTTTACGACATCAAATACACAAGGAACAATTGTGGACTCAGGAACAACTTTAGCATATCTTGCAGATGGGGCATATGATCCATTTGTTAATGCGgtgagcttcatagggcccacttatagttctattttctggaattccccatatatgataagcctacgatagtaattaatcttgttacatgattgttagtcctcatattttgtttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG