1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACAAAATATTTTATCAATTGTTGGATGGGTCTGGTGAATATACTCTAGTTTATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgctggtcccccttgtcatttacagtttttactggcatttacaaaataatcaaatcttaaaaacaacaaaaggacactgccaccataatttatattaggcaccaccaaaccatctaaattatttttcctgttctccaattcctgcag
species | Oryza sativa |
transcript | LOC_Os01g53880.7 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TATGAAGACAGTGAGGGAGACAGGATGCTGGTNGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTEST: gi|86254278|gb|CI059005.1|CI059005
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTEST: gi|86431162|gb|CI083585.1|CI083585
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTEST: gi|88269311|gb|CI380609.1|CI380609
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: ATGAAGACAAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTEST: gi|4714720|gb|AU055837.1|AU055837
genomic: ATGAAGAC-AGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: TATGAAGACAGTGANGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGCGTTCAGAGCTEST: gi|88908179|gb|CI090774.1|CI090774
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: ATGAAGACAGTGAAGGAGACAGGATGCT-GTTNGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTEST: gi|88227853|gb|CI227333.1|CI227333
genomic: ATGAAGACAGTGAAGGAGACAGGATGCTGGTT-GGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: GACAGGATGCTGTTTGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTEST: gi|88271388|gb|CI387441.1|CI387441
genomic: GACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTEST: gi|88274057|gb|CI394463.1|CI394463
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: GGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTEST: gi|25798457|gb|CA754418.1|CA754418
genomic: GGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTEST: gi|13420516|gb|AU174606.1|AU174606
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: GGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTEST: gi|58696125|gb|CK084812.1|CK084812
genomic: GGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCTEST: gi|86884571|gb|CI312950.1|CI312950
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGA-GGTTCTAAGGAGTTCAGAGCTEST: gi|18387819|gb|BM421017.1|BM421017
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
EST: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAA AGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
genomic: TATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgc ... attcctgcagAGTATTTGTCTCAACTGCTAAAAGGCTGAGGGTTCTAAGGAGTTCAGAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAAAATATTTTATCAATTGTTGGATGGGTCTGGTGAATATACTCTAGTTTATGAAGACAGTGAAGGAGACAGGATGCTGGTTGGGGACGTGCCATGGAAgtaagtttgctggtcccccttgtcatttacagtttttactggcatttacaaaataatcaaatcttaaaaacaacaaaaggacactgccaccataatttatattaggcaccaccaaaccatctaaattatttttcctgttctccaattcctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA