1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCAGCTGCGGGACTTGATGCCAGCTGCTCCTGAAACTGCCGTAATCTGTTGTTGTCCGAGGCTGAAGAAGTGGTGCGAATGGCATGACATAGAGTATAAGgtaaaccaacgttctgatattctattcgtttctatgatgttaattcactctgatattttcgttcctgattag
species | Oryza sativa |
transcript | LOC_Os01g33684.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTTGTCCGAGGCTGAAGAAGTGGTGCGAATGGCATGACATAGAGTATAAG GACATTCAGGAAAATCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGTEST: gi|86521641|gb|CI161847.1|CI161847
genomic: GTTGTCCGAGGCTGAAGAAGTGGTGCGAATGGCATGACATAGAGTATAAGgtaaaccaac ... tcctgattagGACATTCAGGAAAATCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGT
EST: GTTGTCCGAGGCTGAAGGAGTGGTGCGAATGGCATGACATAGAGTATAAG GACATTCAGGAAAATCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGTEST: gi|88221089|gb|CI221045.1|CI221045
genomic: GTTGTCCGAGGCTGAAGAAGTGGTGCGAATGGCATGACATAGAGTATAAGgtaaaccaac ... tcctgattagGACATTCAGGAAAATCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGT
EST: GTTGTCCGAGGCTGAAGAAGTGGTGCGAATGGCATGACATAGGGTATAAG GACATTCAGGAAAATCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGTEST: gi|88262095|gb|CI365671.1|CI365671
genomic: GTTGTCCGAGGCTGAAGAAGTGGTGCGAATGGCATGACATAGAGTATAAGgtaaaccaac ... tcctgattagGACATTCAGGAAAATCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGT
EST: GTTGTCCGAGGCTGAAGAAGTGGTGCGAATGGCATGACATAGAGTATAAG GACATTCAGGAAAATCCAGAAGATTCATACGGGAAGCTGTGATACTTTTGTEST: gi|88464359|gb|CI544820.1|CI544820
genomic: GTTGTCCGAGGCTGAAGAAGTGGTGCGAATGGCATGACATAGAGTATAAGgtaaaccaac ... tcctgattagGACATTCAGGAAAATCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGT
EST: GTTGTCCGAGGCTGAAGAAGTGGTGCGAATGGCATGACATAGAGTATAAG GACATTCAGGAAAATCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGTEST: gi|88428240|gb|CI562506.1|CI562506
genomic: GTTGTCCGAGGCTGAAGAAGTGGTGCGAATGGCATGACATAGAGTATAAGgtaaaccaac ... tcctgattagGACATTCAGGAAAATCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGT
EST: GTTGTCCGAGGCTGAAGAAGTGGTGCGAATGGCATGACATAGAGTATAAG GACATTCAGGAAAATCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGTEST: gi|88217276|gb|CI217125.1|CI217125
genomic: GTTGTCCGAGGCTGAAGAAGTGGTGCGAATGGCATGACATAGAGTATAAGgtaaaccaac ... tcctgattagGACATTCAGGAAAATCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGT
EST: GTTGTCCGAGGCTGAAGAAGTGGTGCGAATGGCATGACATAGAGTAT--- ---A---AGGAAAATCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGTEST: gi|88513140|gb|CI440646.1|CI440646
genomic: GTTGTCCGAGGCTGAAGAAGTGGTGCGAATGGCATGACATAGAGTATAAGgtaaaccaac ... tcctgattagGACATTCAGGAAAATCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGT
EST: GTTGTCCGAGGCTGAAGAAGTGGTGCGAATGGCATGACATAGAGTATAAG GACATTCAGGAAAATCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGTEST: gi|88428170|gb|CI557064.1|CI557064
genomic: GTTGTCCGAGGCTGAAGAAGTGGTGCGAATGGCATGACATAGAGTATAAGgtaaaccaac ... tcctgattagGACATTCAGGAAAATCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGT
EST: GTTGTCCGAGGCTGAAGAAGTGGTGCGAATGGCATGACATAGAGTATAAG GACATTCAGGAAAATCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGTEST: gi|88216717|gb|CI216566.1|CI216566
genomic: GTTGTCCGAGGCTGAAGAAGTGGTGCGAATGGCATGACATAGAGTATAAGgtaaaccaac ... tcctgattagGACATTCAGGAAAATCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGT
EST: GTTGTCCGAGGCTGAAGAAGTGGTGCGAATGGCATGACATAGAGTATAAG GACATTCAGGAAAATCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGTEST: gi|88269039|gb|CI380337.1|CI380337
genomic: GTTGTCCGAGGCTGAAGAAGTGGTGCGAATGGCATGACATAGAGTATAAGgtaaaccaac ... tcctgattagGACATTCAGGAAAATCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGT
EST: GTTGTCCGAGGCTGAAGAAGTGGTGCGAATGGCATGACATAGAGTATAAG GACATTCAGGAAAATCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGT
genomic: GTTGTCCGAGGCTGAAGAAGTGGTGCGAATGGCATGACATAGAGTATAAGgtaaaccaac ... tcctgattagGACATTCAGGAAAATCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGCTGCGGGACTTGATGCCAGCTGCTCCTGAAACTGCCGTAATCTGTTGTTGTCCGAGGCTGAAGAAGTGGTGCGAATGGCATGACATAGAGTATAAGgtaaaccaacgttctgatattctattcgtttctatgatgttaattcactctgatattttcgttcctgattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT