1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GATCCTGTGTGTGGAAGCGCACATTGTGTTCTGGCACCTTACTGGGGTGGAAAGCTGGGGAAACAAAAACTTACGGCGTTTCAGgtattatccttttgctaccttcttgtgacaagtagggggtaaacaattgttgccaacattatacttttctgaaaaaaaaaagataagtacaaacggcacaataccatggtcgtcag
species | Oryza sativa |
transcript | LOC_Os01g16146.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CACCTTACTGGGGTGGAAAGCTGGGGAAACAAAAACTTACGGCGTTTCAG GCTTCGCCAAGGAGTGGAACATTGTACTTGGAGCTGGACGGCGAGAACAGGEST: gi|88275856|gb|CI396460.1|CI396460
genomic: CACCTTACTGGGGTGGAAAGCTGGGGAAACAAAAACTTACGGCGTTTCAGgtattatcct ... tggtcgtcagGCTTCGCCAAGGAGTGGAACATTGTACTTGGAGCTGGACGGCGAGAACAGG
EST: CACCTTACTGGGGTGGAAAGCTGGGGAAACAAAAACTTACGGCGTTTCAG GCTTCGCCAAGGAGTGGAACATTGTACTTGGAGCTGGACGGCGAGAACAGGEST: gi|88511717|gb|CI439223.1|CI439223
genomic: CACCTTACTGGGGTGGAAAGCTGGGGAAACAAAAACTTACGGCGTTTCAGgtattatcct ... tggtcgtcagGCTTCGCCAAGGAGTGGAACATTGTACTTGGAGCTGGACGGCGAGAACAGG
EST: CACCTTACTGGGGTGGAAAGCTGGGGAAACAAAAACTTACGGCGTTTCAG GCTTCNCCAAGGAGTGGAACATTNTACTTGGAGCTGGACGGCGAGAACAGGEST: gi|88223894|gb|CI223743.1|CI223743
genomic: CACCTTACTGGGGTGGAAAGCTGGGGAAACAAAAACTTACGGCGTTTCAGgtattatcct ... tggtcgtcagGCTTCGCCAAGGAGTGGAACATTGTACTTGGAGCTGGACGGCGAGAACAGG
EST: CACCTTACTGGGGTGGAAAGCTGGGGAAACAAAAACTTACGGCGTTTCAG GCTTCGCCAAGGAGTGGAACATTGTACTTGGAGCTGGACGGCGAGAACAGGEST: gi|86522833|gb|CI163039.1|CI163039
genomic: CACCTTACTGGGGTGGAAAGCTGGGGAAACAAAAACTTACGGCGTTTCAGgtattatcct ... tggtcgtcagGCTTCGCCAAGGAGTGGAACATTGTACTTGGAGCTGGACGGCGAGAACAGG
EST: CACCTTACTGGGGTGGAAAGCTGGGGAAACAAAAACTTACGGCGTTTCAG GCTTCGCCAAGGAGTGGAACATTGTACTTGGAGCTGGACGGCGAGAACAGGEST: gi|88264915|gb|CI367566.1|CI367566
genomic: CACCTTACTGGGGTGGAAAGCTGGGGAAACAAAAACTTACGGCGTTTCAGgtattatcct ... tggtcgtcagGCTTCGCCAAGGAGTGGAACATTGTACTTGGAGCTGGACGGCGAGAACAGG
EST: CACCTTACTGGGGTGGAAAGCTGGGGAAACAAAAACTTACGGCGTTTCAG GCTTCGCCAAGGAGTGGAACATTGTACTTGGAGCTGGACGGCGAGAACAGGEST: gi|88218690|gb|CI218539.1|CI218539
genomic: CACCTTACTGGGGTGGAAAGCTGGGGAAACAAAAACTTACGGCGTTTCAGgtattatcct ... tggtcgtcagGCTTCGCCAAGGAGTGGAACATTGTACTTGGAGCTGGACGGCGAGAACAGG
EST: CACCTTACTGGGGTGGAAAGCTGGGGAAACAAAAACTTACGGCGTTTCAG GCTTCGCCAAGGAGTGGAACATTGTACTTGGAGCTGGACGGCGAGAACAGGEST: gi|88979995|gb|CI026285.1|CI026285
genomic: CACCTTACTGGGGTGGAAAGCTGGGGAAACAAAAACTTACGGCGTTTCAGgtattatcct ... tggtcgtcagGCTTCGCCAAGGAGTGGAACATTGTACTTGGAGCTGGACGGCGAGAACAGG
EST: CACCTTACTGGGGTGGAAAGCTGGGGAAACAAAAACTTACGGCGTTTCAG GCTTCGCCAAGGAGTGGAACATTGTACTTGGAGCTGGACGGCGAGAACAGGEST: gi|33808573|gb|CF330172.1|CF330172
genomic: CACCTTACTGGGGTGGAAAGCTGGGGAAACAAAAACTTACGGCGTTTCAGgtattatcct ... tggtcgtcagGCTTCGCCAAGGAGTGGAACATTGTACTTGGAGCTGGACGGCGAGAACAGG
EST: CACCTTACTGGGGTGGAAAGCTGGGGAAACAAAAACTTACGGCGTTTCAG GCTTCGCCAAGGAGTGGAACATTGTACTTGGAGCTGGACGGCGAGAACAGGEST: gi|86483314|gb|CI125947.1|CI125947
genomic: CACCTTACTGGGGTGGAAAGCTGGGGAAACAAAAACTTACGGCGTTTCAGgtattatcct ... tggtcgtcagGCTTCGCCAAGGAGTGGAACATTGTACTTGGAGCTGGACGGCGAGAACAGG
EST: CACCTTACTGGGGTGGAAAGCTGGGGAAACAAAAACTTACGGCGTTTCAG GCTTCGCCAAGGAGTGGAACATTGTACTCGGAGCTGGACGGCGAGAACAGGEST: gi|88258968|gb|CI363261.1|CI363261
genomic: CACCTTACTGGGGTGGAAAGCTGGGGAAACAAAAACTTACGGCGTTTCAGgtattatcct ... tggtcgtcagGCTTCGCCAAGGAGTGGAACATTGTACTTGGAGCTGGACGGCGAGAACAGG
EST: CACCTTACTGGGGTGGAAAGCTGGGGAAACAAAAACTTACGGCGTTTCAG GCTTCGCCAAAGAGTGGAACATTGTACTTGGAGCT-GACGGCGAGAACAGG
genomic: CACCTTACTGGGGTGGAAAGCTGGGGAAACAAAAACTTACGGCGTTTCAGgtattatcct ... tggtcgtcagGCTTCGCCAAGGAGTGGAACATTGTACTTGGAGCTGGACGGCGAGAACAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCCTGTGTGTGGAAGCGCACATTGTGTTCTGGCACCTTACTGGGGTGGAAAGCTGGGGAAACAAAAACTTACGGCGTTTCAGgtattatccttttgctaccttcttgtgacaagtagggggtaaacaattgttgccaacattatacttttctgaaaaaaaaaagataagtacaaacggcacaataccatggtcgtcag
- - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG