1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCTTCCTTGTTGCAGTCATTCTTGGCTCTGCTGTACATGCCTCCAATGCAGCTGATAATGAAGAAAAACTAAATGGCTCCACAAATATCTATAAACTTGGgtaagatatttcacatttttcaacacatcaagatatttcacatcaagatacataaaacacattacacactggttagcctatctggatacctctgttagaaaatatattatgccttaggttccaatctatttaaagattctgcgtcttttaatttactgacccctatgatcttaataacctgtaatttccag
species | Oryza sativa |
transcript | LOC_Os12g31850.4 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCTGATAATGAAGAAAAACTAAATGGCTCCACAAATATCTATAAACTTGG GGAAAATGGAAGTGTGGAACCAAACAAAGAAGTCATAGAAAAAGEST: gi|218501335|gb|FG958585.1|FG958585
genomic: GCTGATAATGAAGAAAAACTAAATGGCTCCACAAATATCTATAAACTTGGgtaagatatt ... taatttccagGGAAAATGGAAGTGTGGAACCAAACAAAGAAGTCATAGAAAAAG
EST: GCTGATAATGAAGAAAAACTAAATGGCTCCACAAATATCTATAAACTTGG GGAAAATGGAAGTGTGGAACCAAACAAAGAAGTCATAGAAAAAGEST: gi|29614658|gb|CB619671.1|CB619671
genomic: GCTGATAATGAAGAAAAACTAAATGGCTCCACAAATATCTATAAACTTGGgtaagatatt ... taatttccagGGAAAATGGAAGTGTGGAACCAAACAAAGAAGTCATAGAAAAAG
EST: GCTGATAATGAAGAAAAACTAAATGGCTCCACAAATATCTATAAACTTGG GGAAAATGGAAGTGTGGAACCAAACAAAGAAGTCATAGAAAAAGEST: gi|29665274|gb|CB661549.1|CB661549
genomic: GCTGATAATGAAGAAAAACTAAATGGCTCCACAAATATCTATAAACTTGGgtaagatatt ... taatttccagGGAAAATGGAAGTGTGGAACCAAACAAAGAAGTCATAGAAAAAG
EST: GCTGATAATGAAGAAAAACTAAATGGCTCCACAAATATCTATAAACTTGG GGAAAATGGAAGTGTGGAACCAAACAAAGAAGTCATAGAAAAAGEST: gi|29614656|gb|CB619669.1|CB619669
genomic: GCTGATAATGAAGAAAAACTAAATGGCTCCACAAATATCTATAAACTTGGgtaagatatt ... taatttccagGGAAAATGGAAGTGTGGAACCAAACAAAGAAGTCATAGAAAAAG
EST: GCTGATAATGAAGAAAAACTAAATGGCTCCACAAATATCTATAAACTTGG GGAAAATGGAAGTGTGGAACCAAACAAAGAAGTCATAGAAAAAG
genomic: GCTGATAATGAAGAAAAACTAAATGGCTCCACAAATATCTATAAACTTGGgtaagatatt ... taatttccagGGAAAATGGAAGTGTGGAACCAAACAAAGAAGTCATAGAAAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTCCTTGTTGCAGTCATTCTTGGCTCTGCTGTACATGCCTCCAATGCAGCTGATAATGAAGAAAAACTAAATGGCTCCACAAATATCTATAAACTTGGgtaagatatttcacatttttcaacacatcaagatatttcacatcaagatacataaaacacattacacactggttagcctatctggatacctctgttagaaaatatattatgccttaggttccaatctatttaaagattctgcgtcttttaatttactgacccctatgatcttaataacctgtaatttccag
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA