1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TTCCCCTGCTGGTGTGGGGCTGTCATACTCCAAGAATACTTCGGATTATAACACCGGGGACCTCAAGACCGCCGCGGATTCGCATACTTTTCTTCTGAAGgtactatatatgtgtgttctataattttcagtatggtgaattaaaatcatctgcctgtgcaagatagctgaattttgttatatcttgtcagcag
species | Oryza sativa |
transcript | LOC_Os12g15470.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACACCGGGGACCTCAAGACCGCCGCGGATTCGCATACTTTTCTTCTGAAG TGGTTTCAGCTGTACCCTGAGTTCCTGAGCAATCCATTTTACATAGCTGGGEST: gi|29668081|gb|CB664356.1|CB664356
genomic: ACACCGGGGACCTCAAGACCGCCGCGGATTCGCATACTTTTCTTCTGAAGgtactatata ... ttgtcagcagTGGTTTCAGCTGTACCCTGAGTTCCTGAGCAATCCATTTTACATAGCTGGG
EST: ACACCGGGGACCTCAAGACCGCCGCGGATTCGCATACTTTTCTTCTGAAG TGGTTTCAGCTGTACCCTGAGTTCCTGAGCAATCCATTTTACATAGCTGGGEST: gi|88721922|gb|CI743434.1|CI743434
genomic: ACACCGGGGACCTCAAGACCGCCGCGGATTCGCATACTTTTCTTCTGAAGgtactatata ... ttgtcagcagTGGTTTCAGCTGTACCCTGAGTTCCTGAGCAATCCATTTTACATAGCTGGG
EST: ACACCGGGGACCTCAAGACCGCCGCGGATTCGCATACTTTTCTTCTGAAG TGGTTTCAGCTGTACCCTGAGTTCCTGAGCAATCCATTTTACATAGCTGGGEST: gi|33801783|gb|CF326764.1|CF326764
genomic: ACACCGGGGACCTCAAGACCGCCGCGGATTCGCATACTTTTCTTCTGAAGgtactatata ... ttgtcagcagTGGTTTCAGCTGTACCCTGAGTTCCTGAGCAATCCATTTTACATAGCTGGG
EST: ACACCGGGGACCTCAAGACCGCCGCGGATTCGCATACTTTTCTTCTGAAG TGGTTTCAGCTGTACCCTGAGTTCCTGAGCAATCCATTTTACATAGCTGGGEST: gi|88399116|gb|CI603783.1|CI603783
genomic: ACACCGGGGACCTCAAGACCGCCGCGGATTCGCATACTTTTCTTCTGAAGgtactatata ... ttgtcagcagTGGTTTCAGCTGTACCCTGAGTTCCTGAGCAATCCATTTTACATAGCTGGG
EST: ACACCGGGGACCTCAAGACTGCCGCGGATTCGCATACTTTTCTTCTGAAG TGGTTTCAGCTGTACCCTGAGTTCCTGAGCAATCCATTTTACATAGCTGGGEST: gi|4715276|gb|AU056393.1|AU056393
genomic: ACACCGGGGACCTCAAGACCGCCGCGGATTCGCATACTTTTCTTCTGAAGgtactatata ... ttgtcagcagTGGTTTCAGCTGTACCCTGAGTTCCTGAGCAATCCATTTTACATAGCTGGG
EST: ACACCGGGGACCTCAAGACCGCCGCGGATTCGCATACTTTTCTTCTGAAG TGGTTTCAGCTGTACCCTGAGTTCCTGAGCAATCCATTTTACATAGCTGGG
genomic: ACACCGGGGACCTCAAGACCGCCGCGGATTCGCATACTTTTCTTCTGAAGgtactatata ... ttgtcagcagTGGTTTCAGCTGTACCCTGAGTTCCTGAGCAATCCATTTTACATAGCTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCCCCTGCTGGTGTGGGGCTGTCATACTCCAAGAATACTTCGGATTATAACACCGGGGACCTCAAGACCGCCGCGGATTCGCATACTTTTCTTCTGAAGgtactatatatgtgtgttctataattttcagtatggtgaattaaaatcatctgcctgtgcaagatagctgaattttgttatatcttgtcagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG