1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGAAGAACTTACTACCAGTTTGAGCTGGAACCACCTCATATCTTCATCACTGCAACTGCCGCTGGAAACAGGCTCTACCTGTTCAATGTAACTGCAAATGgtaaaactactgttcctatctcaaaactgtatgacattttctttagaactccgaatgctgaataaaagatatggatcgttgcag
species | Oryza sativa |
transcript | LOC_Os12g08830.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGCAACTGCCGCTGGAAACAGGCTCTACCTGTTCAATGTAACTGCAAATG GGCTACAATGGAAGAGGAATTACAATGACCTGAAGCAAATAGCTGAATCATEST: gi|88541089|gb|CI469182.1|CI469182
genomic: TGCAACTGCCGCTGGAAACAGGCTCTACCTGTTCAATGTAACTGCAAATGgtaaaactac ... atcgttgcagGGCTACAATGGAAGAGGAATTACAATGACCTGAAGCAAATAGCTGAATCAT
EST: TGCAACTGCCGCTGGAAACAGGCTCTACCTGTTCAATGTAACTGCAAATG GGCTACAATGGAAGAGGAATTACAATGACCTGAAGCAAATAGGCTGAATCAEST: gi|27547203|gb|CA765413.2|CA765413
genomic: TGCAACTGCCGCTGGAAACAGGCTCTACCTGTTCAATGTAACTGCAAATGgtaaaactac ... atcgttgcagGGCTACAATGGAAGAGGAATTACAATGACCTGAAGCAAATA-GCTGAATCA
EST: TGCAACTGCCGCTGGAAACAGGCCCTACATGTTCAATGTAACTGCAAATG GGCTACAATGGAAGAGGAATTACAATGACCTGAAGCAAATAGCTGAATCATEST: gi|33673774|gb|CF302013.1|CF302013
genomic: TGCAACTGCCGCTGGAAACAGGCTCTACCTGTTCAATGTAACTGCAAATGgtaaaactac ... atcgttgcagGGCTACAATGGAAGAGGAATTACAATGACCTGAAGCAAATAGCTGAATCAT
EST: TGCAACTGCCGCTGGAAACGGGCTCTACCTGTTCCATGTAACTGCAAATG GGCTACAATGGAAGAGGAATTACAATGACCTGAAGCAAATAGCTGAATCATEST: gi|88533811|gb|CI460479.1|CI460479
genomic: TGCAACTGCCGCTGGAAACAGGCTCTACCTGTTCAATGTAACTGCAAATGgtaaaactac ... atcgttgcagGGCTACAATGGAAGAGGAATTACAATGACCTGAAGCAAATAGCTGAATCAT
EST: TCCAACTGCCGCTGGAAACAGGCTCTACCTGTTCAATNTAACTGCAAATG GGCTACAATGGAAGAGGAATTACAATGACCTGAAGCAAATAGCTGAATCATEST: gi|88995772|gb|CI037130.1|CI037130
genomic: TGCAACTGCCGCTGGAAACAGGCTCTACCTGTTCAATGTAACTGCAAATGgtaaaactac ... atcgttgcagGGCTACAATGGAAGAGGAATTACAATGACCTGAAGCAAATAGCTGAATCAT
EST: TGCAACTGCCGCTGGAAACAGGCTCTACCTGTTCAATGTAACTGCAAATG GGCTACAATGGAAGAGGAATTACAATGACCTGAAGCAAATAGCTGAATCATEST: gi|88541942|gb|CI471246.1|CI471246
genomic: TGCAACTGCCGCTGGAAACAGGCTCTACCTGTTCAATGTAACTGCAAATGgtaaaactac ... atcgttgcagGGCTACAATGGAAGAGGAATTACAATGACCTGAAGCAAATAGCTGAATCAT
EST: TGCAACTCCCGCTGGAAACAGGCTCTACCTGTTCAATGTAACTGCAAATG GGCTACAATGGAAGAGGAATTACAATGACCTGAAGCAAATAGCTGAATCATEST: gi|88271042|gb|CI386897.1|CI386897
genomic: TGCAACTGCCGCTGGAAACAGGCTCTACCTGTTCAATGTAACTGCAAATGgtaaaactac ... atcgttgcagGGCTACAATGGAAGAGGAATTACAATGACCTGAAGCAAATAGCTGAATCAT
EST: TGCAACTGCCGCTGGAAACAGGCTCTACCTGTTCAATGTAACTGCAAATG GGCTACAATGGAAGAGGAATTACAATGGCCTGAAGCAAATAGCTGAATCATEST: gi|88839416|gb|CI005204.1|CI005204
genomic: TGCAACTGCCGCTGGAAACAGGCTCTACCTGTTCAATGTAACTGCAAATGgtaaaactac ... atcgttgcagGGCTACAATGGAAGAGGAATTACAATGACCTGAAGCAAATAGCTGAATCAT
EST: TGCAACTGCCGCTGGAAACAGGCTCTACCTGTTCAATGTAACTGCAAATG GGCTACAATGGAAGAGGAATTACAATGACCTGAAGCAAATAGCTGAATCATEST: gi|88965272|gb|CI009308.1|CI009308
genomic: TGCAACTGCCGCTGGAAACAGGCTCTACCTGTTCAATGTAACTGCAAATGgtaaaactac ... atcgttgcagGGCTACAATGGAAGAGGAATTACAATGACCTGAAGCAAATAGCTGAATCAT
EST: TGCAACTGCCGCTGGAAACAGGCTCTACCTGTTCAATGTAACTGCAAATG GGCTACAATGGAAGAGGAATTACAATGACCTGAAGCAAATAGCTGAATCATEST: gi|33666339|gb|CF297306.1|CF297306
genomic: TGCAACTGCCGCTGGAAACAGGCTCTACCTGTTCAATGTAACTGCAAATGgtaaaactac ... atcgttgcagGGCTACAATGGAAGAGGAATTACAATGACCTGAAGCAAATAGCTGAATCAT
EST: TGCAACTGCCGCTGGAAACAGGCTCTACCTGTTCAATGTAACTGCAAATG GGCTACAATGGAAGAGGAATTACAATGACCTGAAGCAAATAGCTGAATCAT
genomic: TGCAACTGCCGCTGGAAACAGGCTCTACCTGTTCAATGTAACTGCAAATGgtaaaactac ... atcgttgcagGGCTACAATGGAAGAGGAATTACAATGACCTGAAGCAAATAGCTGAATCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAGAACTTACTACCAGTTTGAGCTGGAACCACCTCATATCTTCATCACTGCAACTGCCGCTGGAAACAGGCTCTACCTGTTCAATGTAACTGCAAATGgtaaaactactgttcctatctcaaaactgtatgacattttctttagaactccgaatgctgaataaaagatatggatcgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA