1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttctcacttccccttatttgaactgttccatgtgcatttgcgctaattggtcgcgaattgaggagttgctcggtttctctgatgccgtgtctcg...
species | Oryza sativa |
transcript | LOC_Os09g37910.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|33664242|gb|CF295209.1|CF295209
genomic: CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|33684508|gb|CF312747.1|CF312747
genomic: CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|86256064|gb|CI007780.1|CI007780
genomic: CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|33677032|gb|CF305271.1|CF305271
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: ATTGACAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|86432557|gb|CI086168.1|CI086168
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: AAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|33677015|gb|CF305254.1|CF305254
genomic: AAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|89176361|gb|CI043382.1|CI043382
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|66947180|gb|AU312024.1|AU312024
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|88237036|gb|CI236885.1|CI236885
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: GTGGTGACAAGTGGAAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|86527793|gb|CI167999.1|CI167999
genomic: GTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|33664894|gb|CF295861.1|CF295861
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|33655503|gb|CF278117.1|CF278117
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: AGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|86254444|gb|CI059171.1|CI059171
genomic: AGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: GACAAGTGGAAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|109712974|gb|CI105582.1|CI105582
genomic: GACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: AGTGGAAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|33655324|gb|CF277938.1|CF277938
genomic: AGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|88728459|gb|CI751969.1|CI751969
genomic: CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|94362993|gb|CI053154.1|CI053154
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|89180836|gb|CI009744.1|CI009744
genomic: CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|163926642|gb|EG713658.1|EG713658
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: GGTGGTGACAAGTGGAAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|33653913|gb|CF276527.1|CF276527
genomic: GGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: AGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|88986566|gb|CI033709.1|CI033709
genomic: AGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: TGGAAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|88962196|gb|CI097349.1|CI097349
genomic: TGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: TGGAAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|33657650|gb|CF280264.1|CF280264
genomic: TGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|86488849|gb|CI131482.1|CI131482
genomic: CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: CAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|33659198|gb|CF281811.1|CF281811
genomic: CAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|89171274|gb|CI040551.1|CI040551
genomic: CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: AGTGGAAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACTAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|86253064|gb|CI057989.1|CI057989
genomic: AGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|86415474|gb|CI029485.1|CI029485
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: GGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|88964072|gb|CI032989.1|CI032989
genomic: GGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: GGTGACAAGTGGAAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|33657164|gb|CF279778.1|CF279778
genomic: GGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|13896450|gb|AU182786.1|AU182786
genomic: CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|86517396|gb|CI157602.1|CI157602
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|33659824|gb|CF282437.1|CF282437
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|33680144|gb|CF308383.1|CF308383
genomic: CGGTGATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: ATTGGTAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|88979044|gb|CI025558.1|CI025558
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: GATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|33656519|gb|CF279133.1|CF279133
genomic: GATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCEST: gi|32947912|gb|BP184484.1|BP184484
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
EST: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCT GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
genomic: ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttct ... aacgatgcagGACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGGCAAGGCTGGTGGTGACAAGTGGAAGTCCATGACTGATGCTgtgagtttctcacttccccttatttgaactgttccatgtgcatttgcgctaattggtcgcgaattgaggagttgctcggtttctctgatgccgtgtctcg
- - - - - TGGTGG
- - - - - - - - - - - AGTGGA
- - - - - - - - - - - - TGGAAG