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GAAATCATTGACATGTGTGATTATGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAACgtaagcccattctccctttcctaatttatatctgatgcccgcttcaaagtatgataacagcagatacttctgatcatattttctctatttggttgagata...
species | Oryza sativa |
transcript | LOC_Os09g26880.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAAC GCCCGAATCATATGATGATGGAGEST: gi|29668655|gb|CB664930.1|CB664930
genomic: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAACgtaagcccat ... tttttttcagGCCCGAATCATATGATGATGGAG
EST: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAAC GCCCGAATCATATGATGATGGAGEST: gi|29617477|gb|CB622489.1|CB622489
genomic: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAACgtaagcccat ... tttttttcagGCCCGAATCATATGATGATGGAG
EST: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAAC GCCCGAATCATATGATGATGGAGEST: gi|29668604|gb|CB664879.1|CB664879
genomic: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAACgtaagcccat ... tttttttcagGCCCGAATCATATGATGATGGAG
EST: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAAC GCCCGAATCATATGATGATGGAGEST: gi|29656047|gb|CB652322.1|CB652322
genomic: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAACgtaagcccat ... tttttttcagGCCCGAATCATATGATGATGGAG
EST: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAAC GCCCGAATCATATGATGATGGAGEST: gi|33797257|gb|CF324491.1|CF324491
genomic: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAACgtaagcccat ... tttttttcagGCCCGAATCATATGATGATGGAG
EST: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAAC GCCCGAATCATATGATGATGGAGEST: gi|29656045|gb|CB652320.1|CB652320
genomic: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAACgtaagcccat ... tttttttcagGCCCGAATCATATGATGATGGAG
EST: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAAC GCCCGAATCATATGATGATGGAGEST: gi|29668613|gb|CB664888.1|CB664888
genomic: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAACgtaagcccat ... tttttttcagGCCCGAATCATATGATGATGGAG
EST: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAAC GCCCGAATCATATGATGATGGAGEST: gi|29638871|gb|CB643880.1|CB643880
genomic: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAACgtaagcccat ... tttttttcagGCCCGAATCATATGATGATGGAG
EST: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAAC GCCCGAATCATATGATGATGGAGEST: gi|33683878|gb|CF312117.1|CF312117
genomic: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAACgtaagcccat ... tttttttcagGCCCGAATCATATGATGATGGAG
EST: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAAC GCCCGAATCATATGATGATGGAGEST: gi|29665768|gb|CB662043.1|CB662043
genomic: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAACgtaagcccat ... tttttttcagGCCCGAATCATATGATGATGGAG
EST: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAAC GCCCGAATCATATGATGATGGAGEST: gi|33681819|gb|CF310058.1|CF310058
genomic: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAACgtaagcccat ... tttttttcagGCCCGAATCATATGATGATGGAG
EST: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAAC GCCCGAATCATATGANTGATGGAGEST: gi|29673829|gb|CB670104.1|CB670104
genomic: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAACgtaagcccat ... tttttttcagGCCCGAATCATATGA-TGATGGAG
EST: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAAC GCCCGAATCATATGATGATGGAGEST: gi|29655872|gb|CB652147.1|CB652147
genomic: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAACgtaagcccat ... tttttttcagGCCCGAATCATATGATGATGGAG
EST: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAAC GCCCGAATCATATGATGATGGAGEST: gi|29661446|gb|CB657721.1|CB657721
genomic: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAACgtaagcccat ... tttttttcagGCCCGAATCATATGATGATGGAG
EST: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAAC GCCCGAATCATATGATGATGGAGEST: gi|33675985|gb|CF304224.1|CF304224
genomic: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAACgtaagcccat ... tttttttcagGCCCGAATCATATGATGATGGAG
EST: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAAC GCCCGAATCATATGATGATGGAGEST: gi|29674834|gb|CB671109.1|CB671109
genomic: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAACgtaagcccat ... tttttttcagGCCCGAATCATATGATGATGGAG
EST: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAAC GCCCGAATCATATGATGATGGAGEST: gi|59930146|gb|AB178688.1|AB178688
genomic: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAACgtaagcccat ... tttttttcagGCCCGAATCATATGATGATGGAG
EST: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAAC GCCCAAATCATATGATGATGGAGEST: gi|58689444|gb|CK078131.1|CK078131
genomic: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAACgtaagcccat ... tttttttcagGCCCGAATCATATGATGATGGAG
EST: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAAC GCCCAAATCATATGATGATGGAGEST: gi|29673252|gb|CB669527.1|CB669527
genomic: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAACgtaagcccat ... tttttttcagGCCCGAATCATATGATGATGGAG
EST: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAAC GCCCGAATCATATGATGATGGAGEST: gi|29628521|gb|CB633532.1|CB633532
genomic: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAACgtaagcccat ... tttttttcagGCCCGAATCATATGATGATGGAG
EST: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAAC GCCCAAATCATATGATGATGGAGEST: gi|29668647|gb|CB664922.1|CB664922
genomic: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAACgtaagcccat ... tttttttcagGCCCGAATCATATGATGATGGAG
EST: TGCTGTGGGCCTACGTCGCCAGCTAAATGGGTCCATCATACCATCTGAAC GCCCGAATCATATGATGATGGAGEST: gi|29677488|gb|CB673763.1|CB673763
genomic: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAACgtaagcccat ... tttttttcagGCCCGAATCATATGATGATGGAG
EST: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAAC GCCCGAATCATATGATGATGGAGEST: gi|29668563|gb|CB664838.1|CB664838
genomic: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAACgtaagcccat ... tttttttcagGCCCGAATCATATGATGATGGAG
EST: TGCTGTGGGCCTAAGTCTCCAGCTAAATGGGTCCATCATACCATCTGAAC GCCCGAATCATATGATGATGGAG
genomic: TGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAACgtaagcccat ... tttttttcagGCCCGAATCATATGATGATGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAATCATTGACATGTGTGATTATGCTGTGGGCCTAAGTCGCCAGCTAAATGGGTCCATCATACCATCTGAACgtaagcccattctccctttcctaatttatatctgatgcccgcttcaaagtatgataacagcagatacttctgatcatattttctctatttggttgagata
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