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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGGGGAGATGCTGAACTTTCAGGATCGCCAACTGAAAAGGCTATTCTTTCTTGGGGCCTTAAGgtattaaccctttatctggcttccatactcaagtggttccttcaatggttgtgtacatccgttttggatgtagaggccatgttttaatctattttctaaaaaagttactccagtggttccttcaatgactagttcttccactttgaacag

Basic information

species Oryza sativa
transcript LOC_Os08g40530.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g40530.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G132712_T03 (Zea mays), 5'ss of exon 20
GATGGGGGAGATGCTGAACTTTCAGGATCGCCAACTGAAAAGGCTATTCTTTCTTGGGGCCTTAAGgtattaaccctttatctggcttccatactcaagtggttccttcaatggttgtgtacatccgttttggatgtagaggccatgttttaatctattttctaaaaaagttactccagtggttccttcaatgactagttcttccactttgaacag
||||||||||  ||||||||| | || ||||| ||||||||||| |||||||||||||||||||||||||||   ||||       | |  |||||          |||| |  || |  |  ||| ||||   |||  |   | ||  ||  || |  || || |                                                  
GATGGGGGAGCAGCTGAACTTACTGGTTCGCCTACTGAAAAGGCCATTCTTTCTTGGGGCCTTAAGgtattattacttt-------tgctttactc----------ttcagtatttctacaagtccttttt--ctgtcaa---cttgactt--tccaccttgtacag-------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29636898|gb|CB641907.1|CB641907
EST:     AACTTTCAGGATCGCCAACTGAAAAGGCTATTCTTTCTTGGGGCCTTAAG                         ATAGGAATGGATTTCAATGATGCACGGTCAAAATCTCAAATTCTTCATGTC
genomic: AACTTTCAGGATCGCCAACTGAAAAGGCTATTCTTTCTTGGGGCCTTAAGgtattaaccc ... ctttgaacagATAGGAATGGATTTCAATGATGCACGGTCAAAATCTCAAATTCTTCATGTC
EST: gi|29636809|gb|CB641818.1|CB641818
EST:     AACTTTCAGGATCGCCAACTGAAAAGGCTATTCTTTCTTGGGGCCTTAAG                         ATAGGAATGGATTTCAATGATGCACGGTCAAAATCTCAAATTCTTCATGTC
genomic: AACTTTCAGGATCGCCAACTGAAAAGGCTATTCTTTCTTGGGGCCTTAAGgtattaaccc ... ctttgaacagATAGGAATGGATTTCAATGATGCACGGTCAAAATCTCAAATTCTTCATGTC
EST: gi|4715537|gb|AU056653.1|AU056653
EST:     AACTTTCAGGATCGCCAACTGAAAAGGCTATTCTTTCTTGGGGCCTTAAG                         ATAGGAATGGATTTCAATGATGCACGGTCAAAATCTCAAATTCTTCATGTC
genomic: AACTTTCAGGATCGCCAACTGAAAAGGCTATTCTTTCTTGGGGCCTTAAGgtattaaccc ... ctttgaacagATAGGAATGGATTTCAATGATGCACGGTCAAAATCTCAAATTCTTCATGTC