1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CGTCTGGACACTGCCTTGAAGAACATCGGAATTGATGAGCGTGTTCCTTATAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATGgtatgcaaaggatggcttttgacttctgtatagttcagttcttgtgcatttaataattttgtgcattgcaccaatttag
species | Oryza sativa |
transcript | LOC_Os08g27840.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATG GAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTAEST: gi|29629554|gb|CB634563.1|CB634563
genomic: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATGgtatgcaaag ... accaatttagGAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTA
EST: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATG GAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTAEST: gi|88456811|gb|CI695152.1|CI695152
genomic: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATGgtatgcaaag ... accaatttagGAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTA
EST: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATG GAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTAEST: gi|29629584|gb|CB634593.1|CB634593
genomic: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATGgtatgcaaag ... accaatttagGAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTA
EST: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATG GAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTAEST: gi|88444625|gb|CI694857.1|CI694857
genomic: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATGgtatgcaaag ... accaatttagGAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTA
EST: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATG GAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTAEST: gi|116875630|gb|EC366138.1|EC366138
genomic: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATGgtatgcaaag ... accaatttagGAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTA
EST: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATG GAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTAEST: gi|88328745|gb|CI678548.1|CI678548
genomic: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATGgtatgcaaag ... accaatttagGAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTA
EST: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATG GAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTAEST: gi|29632848|gb|CB637857.1|CB637857
genomic: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATGgtatgcaaag ... accaatttagGAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTA
EST: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATG GAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTAEST: gi|88593045|gb|CI711194.1|CI711194
genomic: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATGgtatgcaaag ... accaatttagGAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTA
EST: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATG GAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTAEST: gi|29634597|gb|CB639606.1|CB639606
genomic: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATGgtatgcaaag ... accaatttagGAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTA
EST: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATG GAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTAEST: gi|88582985|gb|CI699454.1|CI699454
genomic: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATGgtatgcaaag ... accaatttagGAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTA
EST: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATG GAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTAEST: gi|88444723|gb|CI694961.1|CI694961
genomic: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATGgtatgcaaag ... accaatttagGAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTA
EST: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATG GAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTAEST: gi|29634599|gb|CB639608.1|CB639608
genomic: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATGgtatgcaaag ... accaatttagGAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTA
EST: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATG GAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTAEST: gi|88463602|gb|CI696070.1|CI696070
genomic: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATGgtatgcaaag ... accaatttagGAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTA
EST: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATG GAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTAEST: gi|88589049|gb|CI706900.1|CI706900
genomic: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATGgtatgcaaag ... accaatttagGAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTA
EST: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATG GAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTAEST: gi|29634929|gb|CB639938.1|CB639938
genomic: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATGgtatgcaaag ... accaatttagGAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTA
EST: GTTCTCTTCTTGGATGGGAGGAGACCGTGATG GAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTAEST: gi|88391962|gb|CI683782.1|CI683782
genomic: GTTCTCTTCTTGGATGGGAGGAGACCGTGATGgtatgcaaag ... accaatttagGAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTA
EST: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATG GAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTAEST: gi|29630865|gb|CB635874.1|CB635874
genomic: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATGgtatgcaaag ... accaatttagGAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTA
EST: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATG GAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTAEST: gi|29629203|gb|CB634214.1|CB634214
genomic: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATGgtatgcaaag ... accaatttagGAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTA
EST: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATG GAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTAEST: gi|87017108|gb|CI286244.1|CI286244
genomic: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATGgtatgcaaag ... accaatttagGAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTGCTA
EST: TAATGCACCCCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATG GAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTTTGCT
genomic: TAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATGgtatgcaaag ... accaatttagGAAATCCAAGAGTGACACCAGAAGTCACAAGGGATGTATGCTTGCTT-GCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTCTGGACACTGCCTTGAAGAACATCGGAATTGATGAGCGTGTTCCTTATAATGCACCTCTCATTCAGTTCTCTTCTTGGATGGGAGGAGACCGTGATGgtatgcaaaggatggcttttgacttctgtatagttcagttcttgtgcatttaataattttgtgcattgcaccaatttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA