1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
TTCAAGATGTTCGCTCTGATCTCGCAAAGCTGCGAGGTGTACTATTTTATAAAATTTTGGAAGAGCTGCATAGTCATCTATACAACAATGGAGAATACAGgtacgttcttatgtctgattgttctcattttgttataacaaattgcggtgtgtgtcaacttgccaatgtgtgcgattcagtagaaggacttgcaaaatga...
species | Oryza sativa |
transcript | LOC_Os08g22864.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAAATTTTGGAAGAGCTGCATAGTCATCTATACAACAATGGAGAATACAG CTCGGTGACTTTAAGCATGGTTGATAATGAAGAACTACCAACATCTACGGCEST: gi|33678502|gb|CF306741.1|CF306741
genomic: AAAATTTTGGAAGAGCTGCATAGTCATCTATACAACAATGGAGAATACAGgtacgttctt ... ctttgtccagCTCGGTGACTTTAAGCATGGTTGATAATGAAGAACTACCAACATCTACGGC
EST: GGAGAATACAG CTCGGTGACTTTAAGCATGGTTGATAATGAAGAACTACCAACATCTACGGCEST: gi|58613190|gb|CK040902.1|CK040902
genomic: GGAGAATACAGgtacgttctt ... ctttgtccagCTCGGTGACTTTAAGCATGGTTGATAATGAAGAACTACCAACATCTACGGC
EST: AAAATTTTGGAAGAGCTGCATAGTCATCTATACAACAATGGAGAATACAG CTCGGTGACTTTAAGCATGGTTGATAATGAAGAACTACCAACATCTACGGC
genomic: AAAATTTTGGAAGAGCTGCATAGTCATCTATACAACAATGGAGAATACAGgtacgttctt ... ctttgtccagCTCGGTGACTTTAAGCATGGTTGATAATGAAGAACTACCAACATCTACGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCAAGATGTTCGCTCTGATCTCGCAAAGCTGCGAGGTGTACTATTTTATAAAATTTTGGAAGAGCTGCATAGTCATCTATACAACAATGGAGAATACAGgtacgttcttatgtctgattgttctcattttgttataacaaattgcggtgtgtgtcaacttgccaatgtgtgcgattcagtagaaggacttgcaaaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA