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ACTACTGAAGGAAAAACATCACGGGGTTCTCATATCTGCTGTTCAGCTCTGCGCAGAACTTTGTAAAGCAAGCAAAGAGGCATTGGAGTACCTGAGGAAGgtacgatgcattctaggaaccgttatattttttccttggacaatgctgcctattaccttctgtttgcattctcaaagttactatgtaacaaattacttat...
species | Oryza sativa |
transcript | LOC_Os06g07090.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCGCAGAACTTTGTAAAGCAAGCAAAGAGGCATTGGAGTACCTGAGGAAG AACTGCCTTGATGGTTTGGTCAGAATACTGAGAGATGTGTCCAATAGTTCAEST: gi|29672354|gb|CB668629.1|CB668629
genomic: GCGCAGAACTTTGTAAAGCAAGCAAAGAGGCATTGGAGTACCTGAGGAAGgtacgatgca ... cgttctacagAACTGCCTTGATGGTTTGGTCAGAATACTGAGAGATGTGTCCAATAGTTCA
EST: GCGCAGAACTTTGTAAAGCAAGCAAAGAGGCATTGGAGTACCTGAGGAAG AACTGCCTTGATGGTTTGGTCAGAATACTGAGAGATGTGTCCAATAGTTCAEST: gi|87015454|gb|CI303060.1|CI303060
genomic: GCGCAGAACTTTGTAAAGCAAGCAAAGAGGCATTGGAGTACCTGAGGAAGgtacgatgca ... cgttctacagAACTGCCTTGATGGTTTGGTCAGAATACTGAGAGATGTGTCCAATAGTTCA
EST: GCGCAGAACTTTGTAAAGCAAGCAAAGAGGCATTGGAGTACCTGAGGAAG AACTGCCTTGATGGTTTGGTCAGAATACTGAGAGATGTGTCCAATAGTTCA
genomic: GCGCAGAACTTTGTAAAGCAAGCAAAGAGGCATTGGAGTACCTGAGGAAGgtacgatgca ... cgttctacagAACTGCCTTGATGGTTTGGTCAGAATACTGAGAGATGTGTCCAATAGTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTACTGAAGGAAAAACATCACGGGGTTCTCATATCTGCTGTTCAGCTCTGCGCAGAACTTTGTAAAGCAAGCAAAGAGGCATTGGAGTACCTGAGGAAGgtacgatgcattctaggaaccgttatattttttccttggacaatgctgcctattaccttctgtttgcattctcaaagttactatgtaacaaattacttat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG