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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGCTCGTCTACTACCGCGGCCGCGCCCCCAACGGCCACAAGTCCGACTGGATCATGCACGAGTACCGCCTCGAGACCACCGAGACGGCCCCGCCGCAGgtaggagtatatatctatctatcttcttcttaatttccagttcatccatctgcttgcatatatatgctagcttcagagaaacgtcacatactccaattaatgcaattaattcattcaaggttataaattaaagaatggatatgatgcatgcag

Basic information

species Oryza sativa
transcript LOC_Os06g01480.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g01480.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G440219_T01 (Zea mays), 5'ss of exon 2
GACGCTCGTCTACTACCGCGGCCGCGCCCCCAACGGCCACAAGTCCGACTGGATCATGCACGAGTACCGCCTCGAGACCACCGAGACGGCCCCGCCGCAGgtaggagtatatatctatctatcttcttcttaatttccagttcatccatctgcttgcatatatatgctagcttcagagaaacgtcacatactccaattaatgcaattaattcattca--aggttataaattaaagaatggatatgatgcatgcag-----
|||||| || ||||||   ||| | || ||||| |||||||||||||||||||||||||||||||||||||| || ||||  ||||  | ||| || |||| | ||  |   ||  || ||  || |||  || ||  | |  || ||      |||||  ||     |       || || ||  |   || |  ||| |  |   |        |  || |||| |   | | |||  |||  ||  ||  |      
GACGCTGGTGTACTACAAGGGCAGAGCTCCCAATGGCCACAAGTCCGACTGGATCATGCACGAGTACCGCCTTGAAACCAATGAGAATGGCCCTCCACAGgcaaga--agcaattaatgtag-ttattcgcaaattaaattatattcagtaatatgcatgcatgcatgatacctgcagcaaggttgccagcttctcttagtttatccagcctgcagatcagattatcatgaagaaaatatataccatctatatatttcag

upper sequence: LOC_Os06g01480.1 (Oryza sativa), 5'ss of exon 4
lower sequence: EFJ22020 (Selaginella moellendorffii), 5'ss of exon 2
GACGCTCGTCTACTACCGCGGCCGCGCCCCCAACGGCCACAAGTCCGACTGGATCATGCACGAGTACCGCCTCGAG-ACCACCGAGACGGCCCCGCCGCAGgtaggagtatatatctatctatcttcttcttaatttccagttcatccatctgcttgcatatatatgctagcttcagagaaacgtcacatactccaattaatgcaattaattcattcaaggttataaattaaagaatggatatgatgcatgcag
          | |||| | ||  | || || ||||| || ||| ||||||||||||||||||||||| | |||||| |  ||     | ||   | |      |  | | ||      |||      |      |||    |||    | |  |||   | | |    | |  || || |  |                                                                       
---------TTTCTACAGAGGGAGAGCTCCAAACGGGCAGAAGACCGACTGGATCATGCACGAGTACAGGCTCGAGGAGGACATCAGCAGCAGTGGCAGCAACAACAATgtaagatcctctcgtacttggcagcttttttcttctataaccctcttatttttttggttttggctctgaaatgcag---------------------------------------------------------------------