1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ACGTTGTGTCAATTGCAAAGACTGGGGAGAATTTCCGCCTTCTGTATGACACCAAGGGTCGCTTCCGTCTCCACAGCATCAAGGATGAGGACGCTAAGgtttatattaaattatccatcactatatggttcataatagtaggaacttttgctttgtattcttctgtgcaatacaaaaacaaacaactaaaaatatcct...
species | Oryza sativa |
transcript | LOC_Os05g30530.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCCGTCTCCACAGCATCAAGGATGAGGACGCTAAG TTCAAGCTCTGCAAGGTCCGGTCTGTACAGTTTGGACAGAAGGGTATTCCTEST: gi|5003050|gb|AU068159.1|AU068159
genomic: TCCGTCTCCACAGCATCAAGGATGAGGACGCTAAGgtttatatta ... aataatgcagTTCAAGCTCTGCAAGGTCCGGTCTGTACAGTTTGGACAGAAGGGTATTCCT
EST: ACACCAAGGGTCGCTTCCGTCTCCACAGCATCAAGGATGAGGACGCTAAG TTCAAGCTCTGCAAGGTCCGGTCTGTACAGTEST: gi|88580947|gb|CI697911.1|CI697911
genomic: ACACCAAGGGTCGCTTCCGTCTCCACAGCATCAAGGATGAGGACGCTAAGgtttatatta ... aataatgcagTTCAAGCTCTGCAAGGTCCGGTCTGTACAGT
EST: ACACCAAGGGTCGCTTCCGTCTCCACAGCATCAAGGATGAGGACGCTAAG TTCAAGCTCTGCAAGGTCCGGTCTGTACAGTTTGGACAGAAGGGTATTCCTEST: gi|33690878|gb|CF319117.1|CF319117
genomic: ACACCAAGGGTCGCTTCCGTCTCCACAGCATCAAGGATGAGGACGCTAAGgtttatatta ... aataatgcagTTCAAGCTCTGCAAGGTCCGGTCTGTACAGTTTGGACAGAAGGGTATTCCT
EST: AGCATCAAGGATGAGGACGCTAAG TTCAAGCTCTGCAAGGTCCGGTCTGTACAGTTTGGACAGAAGGGTATTCCT
genomic: AGCATCAAGGATGAGGACGCTAAGgtttatatta ... aataatgcagTTCAAGCTCTGCAAGGTCCGGTCTGTACAGTTTGGACAGAAGGGTATTCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGTTGTGTCAATTGCAAAGACTGGGGAGAATTTCCGCCTTCTGTATGACACCAAGGGTCGCTTCCGTCTCCACAGCATCAAGGATGAGGACGCTAAGgtttatattaaattatccatcactatatggttcataatagtaggaacttttgctttgtattcttctgtgcaatacaaaaacaaacaactaaaaatatcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaata