1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGGGAAACTTAACTAACTTGGTCAGTTTGGATCTTTACCTGAACAACTTCACTGGTTTTATTCCGGAAACCTTGGGGCAACTCTACAAGCTGCGTTTCCTgtaagtgtactccactttttttttattatgaatagaattataaattgtgtatatcattgaaggccttcctgtttgaatgatcataacataattctttatttgcatgtcttcttgtaaggatag
species | Oryza sativa |
transcript | LOC_Os04g38480.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACTGGTTTTATTCCGGAAACCTTGGGGCAACTCTACAAGCTGCGTTTCCT TCGTCTTAACAACAACAGTCTTTCTGGTTCAATTCCAAAATCCTTGACCAAEST: gi|29633283|gb|CB638292.1|CB638292
genomic: ACTGGTTTTATTCCGGAAACCTTGGGGCAACTCTACAAGCTGCGTTTCCTgtaagtgtac ... gtaaggatagTCGTCTTAACAACAACAGTCTTTCTGGTTCAATTCCAAAATCCTTGACCAA
EST: ACTGGTTTTATTCCGGAAACCTTGGGGCAACTCTACAAGCTGCGTTTCCT TCGTCTTAACAACAACAGTCTTTCTGGTTCAATTCCAAAATCCTTGACCAAEST: gi|58688409|gb|CK077096.1|CK077096
genomic: ACTGGTTTTATTCCGGAAACCTTGGGGCAACTCTACAAGCTGCGTTTCCTgtaagtgtac ... gtaaggatagTCGTCTTAACAACAACAGTCTTTCTGGTTCAATTCCAAAATCCTTGACCAA
EST: GCAACTCTACAAGCTGCGTTTCCT TCGTCTTAACAACAACAGTCTTTCTGGTTCAATTCCAAAATCCTTGANCAAEST: gi|58665168|gb|CK053854.1|CK053854
genomic: GCAACTCTACAAGCTGCGTTTCCTgtaagtgtac ... gtaaggatagTCGTCTTAACAACAACAGTCTTTCTGGTTCAATTCCAAAATCCTTGACCAA
EST: ACTGGTTTTATTCCGGAAACCTTGGGGCAACTCTACAAGCTGCGTTTCCT TCGTCTTAACAACAACAGTCTTTCTGGTTCAATTCCAAAATCCTTGACCAA
genomic: ACTGGTTTTATTCCGGAAACCTTGGGGCAACTCTACAAGCTGCGTTTCCTgtaagtgtac ... gtaaggatagTCGTCTTAACAACAACAGTCTTTCTGGTTCAATTCCAAAATCCTTGACCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGAAACTTAACTAACTTGGTCAGTTTGGATCTTTACCTGAACAACTTCACTGGTTTTATTCCGGAAACCTTGGGGCAACTCTACAAGCTGCGTTTCCTgtaagtgtactccactttttttttattatgaatagaattataaattgtgtatatcattgaaggccttcctgtttgaatgatcataacataattctttatttgcatgtcttcttgtaaggatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC