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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTAGGTGACTTTTGGATGCTCGATACTGgtaaacttctatactttctcaagcattttaagaccccttccttaatttgtttgggcgtatagtggaggttcccgtgattactaataaccgtcatgttgcctctttcatattccag

Basic information

species Oryza sativa
transcript LOC_Os03g61950.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|117250064|gb|CT843884.1|CT843884
EST:     ATTAGGTGACTTTTGGATGCTCGATACTG                         ACATATGGCAATGGTCAGAGTTAACCGGCTTTGGTGATCTACCATCACCTC
genomic: ATTAGGTGACTTTTGGATGCTCGATACTGgtaaacttct ... catattccagACATATGGCAATGGTCAGAGTTAACCGGCTTTGGTGATCTACCATCACCTC
EST: gi|29686595|gb|CB682870.1|CB682870
EST:     ATTAGGTGACTTTTGGATGCTCGATACTG                         ACATATGGCAATGGTCAGAGTTAACCGGCTTTGGTGATCTACCATCACCTC
genomic: ATTAGGTGACTTTTGGATGCTCGATACTGgtaaacttct ... catattccagACATATGGCAATGGTCAGAGTTAACCGGCTTTGGTGATCTACCATCACCTC
EST: gi|88361530|gb|CI605311.1|CI605311
EST:     ATTAGGTGACTTTTGGATGCTCGATACTG                         ACATATGGCAATGGTCAGAGTTAACCGGCTTTGGTGATCTACCATCACCTC
genomic: ATTAGGTGACTTTTGGATGCTCGATACTGgtaaacttct ... catattccagACATATGGCAATGGTCAGAGTTAACCGGCTTTGGTGATCTACCATCACCTC
EST: gi|40486394|gb|BX897943.1|BX897943
EST:     ATTAGGTGACTTTTGGATGCTCGATACTG                         ACATATGGCAATGGTCAGAGTTAACCGGCTTTGGTGATCTACCATCACCTC
genomic: ATTAGGTGACTTTTGGATGCTCGATACTGgtaaacttct ... catattccagACATATGGCAATGGTCAGAGTTAACCGGCTTTGGTGATCTACCATCACCTC