1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTGTCTGAGAGGCTGTACAATAGCCTGGACTATATGACGAAGAAATTGAGGTTCACCATGCCGTTTCCCATGCTGGCATTCCCATTATACTTGgttaggccaagagcttcttgacattcattatcaactgtattagaggttcttattttgtaatatcatactaaattcctggtttggggttcatgtctatgcag
species | Oryza sativa |
transcript | LOC_Os03g18070.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AATTGAGGTTCACCATGCCGTTTCCCATGCTGGCATTCCCATTATACTTG TTTGCAAGGAGTCCAGGGAAAAAAGGTTCACACTTCAACCCAAGCAGTGATEST: gi|58587962|gb|CF986270.1|CF986270
genomic: AATTGAGGTTCACCATGCCGTTTCCCATGCTGGCATTCCCATTATACTTGgttaggccaa ... gtctatgcagTTTGCAAGGAGTCCAGGGAAAAAAGGTTCACACTTCAACCCAAGCAGTGAT
EST: AATTGAGGTTCACCATGCCGTTTCCCATGCTGGCATTCCCATTATACTTG TTTGCAAGGAGTCCAGGGAAAAAAGGTTCACACTTCAACCCAAGCAGTGATEST: gi|88688814|gb|CI732390.1|CI732390
genomic: AATTGAGGTTCACCATGCCGTTTCCCATGCTGGCATTCCCATTATACTTGgttaggccaa ... gtctatgcagTTTGCAAGGAGTCCAGGGAAAAAAGGTTCACACTTCAACCCAAGCAGTGAT
EST: AATTGAGGTTCACCATGCCGTTTCCCATGCTGGCATTCCCATTATACTTG TTTGCAAGGAGTCCAGGGAAAAAAGGTTCACACTTCAACCCAAGCAGTGATEST: gi|29684208|gb|CB680483.1|CB680483
genomic: AATTGAGGTTCACCATGCCGTTTCCCATGCTGGCATTCCCATTATACTTGgttaggccaa ... gtctatgcagTTTGCAAGGAGTCCAGGGAAAAAAGGTTCACACTTCAACCCAAGCAGTGAT
EST: GCCGTTTCCCATGCTCGCATTCCCATTATACTTG TTTGCAAGGAGTCCAGGGAAAAAAGGTTCACACTTCAACCCAAGCAGTGATEST: gi|29618634|gb|CB623646.1|CB623646
genomic: GCCGTTTCCCATGCTGGCATTCCCATTATACTTGgttaggccaa ... gtctatgcagTTTGCAAGGAGTCCAGGGAAAAAAGGTTCACACTTCAACCCAAGCAGTGAT
EST: A-TGAGGTTTCACCATGCCGTTTCCCATGCTGGCATTCCCATTATACTTG TTTGCAAGGAGTCCAGGGAAAAAAGGTTCACACTTCAACCCAAGCAGTGATEST: gi|88689151|gb|CI732727.1|CI732727
genomic: ATTGAGG-TTCACCATGCCGTTTCCCATGCTGGCATTCCCATTATACTTGgttaggccaa ... gtctatgcagTTTGCAAGGAGTCCAGGGAAAAAAGGTTCACACTTCAACCCAAGCAGTGAT
EST: AATTGAGGTTCACCATGCCGTTTCCCATGCTGGCATTCCCATTATACTTG TTTGCAAGGAGTCCAGGGAAAAAAGGTTCACACTTCAACCCAAGCAGTGATEST: gi|88691186|gb|CI735265.1|CI735265
genomic: AATTGAGGTTCACCATGCCGTTTCCCATGCTGGCATTCCCATTATACTTGgttaggccaa ... gtctatgcagTTTGCAAGGAGTCCAGGGAAAAAAGGTTCACACTTCAACCCAAGCAGTGAT
EST: AATTGAGGTTCACCATGCCGTTTCCCATGCTGGCATTCCCATTATACTTG TTTGCAAGGAGTCCAGGGAAAAAAGGTTCACACTTCAACCCAAGCAGTGAT
genomic: AATTGAGGTTCACCATGCCGTTTCCCATGCTGGCATTCCCATTATACTTGgttaggccaa ... gtctatgcagTTTGCAAGGAGTCCAGGGAAAAAAGGTTCACACTTCAACCCAAGCAGTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTCTGAGAGGCTGTACAATAGCCTGGACTATATGACGAAGAAATTGAGGTTCACCATGCCGTTTCCCATGCTGGCATTCCCATTATACTTGgttaggccaagagcttcttgacattcattatcaactgtattagaggttcttattttgtaatatcatactaaattcctggtttggggttcatgtctatgcag
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