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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCCGCTGGCAAATGATACAAGCTGTGAATCAAATGTGACTACCCCTCAAAACCCTTTAAGGGATGCAAGTAACCCCTCTGGgtaagtaaatagttctgagtgactcaggtagaattattgttggatggacttgctctttcgatatcatgctatcttaactgccttttatcttgttctag

Basic information

species Oryza sativa
transcript LOC_Os03g01890.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g01890.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G109987_T01 (Zea mays), 5'ss of exon 4
ACTCCGCTGGCAAATGATACAAGCTGTGAATCAAATGTGACTACCCCTCAAAACCCTTTAAGGGATGCAAGTAACCCCTCTGGgtaagtaaatagttctgagtgactcaggtagaattattgttggatggacttgctctttcgatatcatgcta-tcttaactgcctttta--tcttgttctag
||| |  |||| ||||| |||||||||||||||||||| |||||||||| ||||||| ||||||| ||||||||||| ||||||||||| |||  |||||     ||   | || ||| ||||||  |   |||||  |||| | |  || ||| || |||   | ||  |  |||||||  ||
ACTTCATTGGCCAATGACACAAGCTGTGAATCAAATGTCACTACCCCTCCAAACCCTATAAGGGACGCAAGTAACCCTTCTGGgtaagtgaatcattctggccatctggagaaggattcttgttgcgtaaccttgccatttcaagactatcctaatcataataccattccaattcttgtttcag

upper sequence: LOC_Os03g01890.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G042250_T03 (Zea mays), 5'ss of exon 4
ACTCCGCTGGCAAATGATACAAGCTGTGAATCAAATGTGACTACCCCTCAAAACCCTTTAAGGGATGCAAGTAACCCCTCTGGgtaagtaaatagttctgagtgactcaggtagaattattgttggatggacttgctctttcgatatcatgctatcttaactgcctttt---atcttgttctag
||| |  |||| |||||||||||||||||||||||||| ||| |||||| |||| || ||||||||||||||||||| ||||||||||| ||| ||||||     ||   | || ||| ||||||  |   |||||  ||  || |   | |||     | |||| |||   ||||||||  ||
ACTTCATTGGCCAATGATACAAGCTGTGAATCAAATGTCACTGCCCCTCCAAACGCTATAAGGGATGCAAGTAACCCTTCTGGgtaagtgaatcgttctggccatctggagaaggatttttgttgcgtaaccttgccatt--gagactgtcctaatcatagtgccatttcaaatcttgtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29634707|gb|CB639716.1|CB639716
EST:     AATGTGACTACCCCTCAAAACCCTTTAAGGGATGCAAGTAACCCCTCTGG                         GCTCCTTTCAATTGCAGAGGAGACCTTGACAGAGTTCCTCTCAAAGGCTAC
genomic: AATGTGACTACCCCTCAAAACCCTTTAAGGGATGCAAGTAACCCCTCTGGgtaagtaaat ... cttgttctagGCTCCTTTCAATTGCAGAGGAGACCTTGACAGAGTTCCTCTCAAAGGCTAC
EST: gi|29642722|gb|CB647729.1|CB647729
EST:     AATGTGACTACCCCTCAAAACCCTTTAAGGGATGCAAGTAACCCCTCTGG                         GCTCCTTTCAATTGCAGAGGAGACCTTGACAGAGTTCCTCTCAAAGGCTAC
genomic: AATGTGACTACCCCTCAAAACCCTTTAAGGGATGCAAGTAACCCCTCTGGgtaagtaaat ... cttgttctagGCTCCTTTCAATTGCAGAGGAGACCTTGACAGAGTTCCTCTCAAAGGCTAC
EST: gi|58663402|gb|CK052088.1|CK052088
EST:     AATGTGACTACCCCTCAAAACCCTTTAAGGGATGCAAGTAACCCCTCTGG                         GGCTCCTTTCAATTGCAGAGGAGACCTTGACAGAGTTCCTCTCAAAGGCTA
genomic: AATGTGACTACCCCTCAAAACCCTTTAAGGGATGCAAGTAACCCCTCTGGgtaagtaaat ... cttgttctagG-CTCCTTTCAATTGCAGAGGAGACCTTGACAGAGTTCCTCTCAAAGGCTA
EST: gi|88205580|gb|CI205429.1|CI205429
EST:     AATGTGACTACCCCTCAAAACCCTTTAAGGGATGCAAGTAACCCCTCTGG                         GCTCCTTTCAATTGCAGAGGAGACCTTGACAGAGTTCCTCTCAAAGGCTAC
genomic: AATGTGACTACCCCTCAAAACCCTTTAAGGGATGCAAGTAACCCCTCTGGgtaagtaaat ... cttgttctagGCTCCTTTCAATTGCAGAGGAGACCTTGACAGAGTTCCTCTCAAAGGCTAC
EST: gi|29678474|gb|CB674749.1|CB674749
EST:     AATGTGACTACCCCTCAAAACCCTTTAAGGGATGCAAGTAACCCCTCTGG                         GCTCCTTTCAATTGCAGAGGAGACCTTGACAGAGTTCCTCTCAAAGGCTAC
genomic: AATGTGACTACCCCTCAAAACCCTTTAAGGGATGCAAGTAACCCCTCTGGgtaagtaaat ... cttgttctagGCTCCTTTCAATTGCAGAGGAGACCTTGACAGAGTTCCTCTCAAAGGCTAC