1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TATACTGCCTCCCTGATATCTGATAGGTTCTGGAATAATAAGATTCAGATCAATTCATCTATTTTTGGAGATTATGAAGTTATAAATGTTACCTATCCAGgtaaaacctatacaatgaatatttgcttcttaagcctgccttttgtctgtctgggcgcctcaagttatatgtttcactaattcatcgttgtcactacag
species | Oryza sativa |
transcript | LOC_Os02g57080.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAATGTTACCTATCCAG GCTTGCGATCTCCGCCACCATCTCTGCCTGAGACATCTCATGGATCTGATCEST: gi|58606908|gb|CK034941.1|CK034941
genomic: AAATGTTACCTATCCAGgtaaaaccta ... gtcactacagGCTTGCGATCTCCGCCACCATCTCTGCCTGAGACATCTCATGGATCTGATC
EST: CAATTCATCTATTTTTGGAGATTATGAAGTTATAAATGTTACCTATCCAG GCTTGCGATCTCCGCCACCATCTCTGCCTGAGACATCTCATGGATCTGATCEST: gi|58680101|gb|CK068788.1|CK068788
genomic: CAATTCATCTATTTTTGGAGATTATGAAGTTATAAATGTTACCTATCCAGgtaaaaccta ... gtcactacagGCTTGCGATCTCCGCCACCATCTCTGCCTGAGACATCTCATGGATCTGATC
EST: CAATTCATCTATTTTTGGAGATTATGAAGTTATAAATGTTACCTATCCAG GCTTGCGATCTCCGCCACCATCTCTGCCTGAGACATCTCATGGATCTGATCEST: gi|58657537|gb|CK046217.1|CK046217
genomic: CAATTCATCTATTTTTGGAGATTATGAAGTTATAAATGTTACCTATCCAGgtaaaaccta ... gtcactacagGCTTGCGATCTCCGCCACCATCTCTGCCTGAGACATCTCATGGATCTGATC
EST: CAATTCATCTATTTTTGGAGATTATGAAGTTATAAATGTTACCTATCCAG GCTTGCGATCTCCGCCACCATCTCTGCCTGAGACATCTCEST: gi|58670437|gb|CK059123.1|CK059123
genomic: CAATTCATCTATTTTTGGAGATTATGAAGTTATAAATGTTACCTATCCAGgtaaaaccta ... gtcactacagGCTTGCGATCTCCGCCACCATCTCTGCCTGAGACATCTC
EST: CAATTCATCTATTTTTGGAGATTATGAAGTTATAAATGTTACCTATCCAG GCTTGCGATCTCCGCCACCATCTCTGCCTGAGACATCTCATGGATCTGATC
genomic: CAATTCATCTATTTTTGGAGATTATGAAGTTATAAATGTTACCTATCCAGgtaaaaccta ... gtcactacagGCTTGCGATCTCCGCCACCATCTCTGCCTGAGACATCTCATGGATCTGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATACTGCCTCCCTGATATCTGATAGGTTCTGGAATAATAAGATTCAGATCAATTCATCTATTTTTGGAGATTATGAAGTTATAAATGTTACCTATCCAGgtaaaacctatacaatgaatatttgcttcttaagcctgccttttgtctgtctgggcgcctcaagttatatgtttcactaattcatcgttgtcactacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT