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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAAGCGAAGAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAGgtacaagatcactgtaaaacttgcttgttgtggtgatacttttggatgtgtctatgtgaatttcagttttttctacagttatggtttgagcacaacgaaaaacttaatacaataacattatacctattggaaacag

Basic information

species Oryza sativa
transcript LOC_Os02g35470.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g35470.3 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G113453_T01 (Zea mays), 5'ss of exon 4
GTAAGCGAAGAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAGgtacaagatcactgtaaaacttgcttgttgtggtgatacttttg-gatgtgtctatgt--gaatttcagttttttc--tacagttatggtttgagcacaacgaaaaacttaatacaat---aacattatacctat-----tggaaacag
||||| ||||| ||||||||||||||||||||  |||||||||| ||||| || |||||||| || |  |      ||||| |   |  || |||  |||  | ||||| ||| | |  ||| || || ||| |   |    || || | | | ||||   ||     |     | |    | || | ||  ||     || ||||||
GTAAGTGAAGAAGTAGAGCGTGCTTTAGCCAAACTGGGTCCTGCTAGAATCCAAGGAAGgtaaaaaaaaatc----aacttacacttcatgttgacgcttgggagatgt-tctgtcttggaaattgagatttattgttgatattgtgatattaccacattaaaggctcttgggaagttgggatatgaaactaatatatatgaaaacag

upper sequence: LOC_Os02g35470.3 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G054109_T01 (Zea mays), 5'ss of exon 4
GTAAGCGAAGAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAGgtacaagatcactgtaaaacttgcttgttgtggtgatacttttg-gatgt---gtctatg----tgaatttcagtttt----ttctacagttatggtttgagcacaacgaaaaa-cttaatacaataacattatacctattggaaacag
||||| ||||| ||||||||||||||||||||  |||||||||| |||||||| |||||||| || |         ||||||||  |  |||| |  |||  | |||||   ||||  |    |||  || | | ||    || |  | ||||| | | | ||||   ||    ||| ||| |  ||  | ||| | || | ||||||
GTAAGTGAAGAAGTAGAGCGTGCTTTAGCCAAACTGGGTCCTGCTAGAATTCAAGGAAGgtaaaaaaatc------aacttgctcctcatggtaacgcttgggagatgttctgtcttggaaattgagatttactgttgctattgtgaatttatgatattatcacattaaaggctcttgatatacaaaactaatatccat-gaaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29662458|gb|CB658733.1|CB658733
EST:     TGGGTCCTGCCATAATTCAGGGAAG                         GTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAA
genomic: TGGGTCCTGCCAGAATTCAGGGAAGgtacaagatc ... ttggaaacagGTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAA
EST: gi|58695876|gb|CK084563.1|CK084563
EST:     GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAG                         GTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAA
genomic: GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAGgtacaagatc ... ttggaaacagGTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAA
EST: gi|29675099|gb|CB671374.1|CB671374
EST:     GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAG                         GTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAA
genomic: GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAGgtacaagatc ... ttggaaacagGTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAA
EST: gi|29674900|gb|CB671175.1|CB671175
EST:     GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAG                         GTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAA
genomic: GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAGgtacaagatc ... ttggaaacagGTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAA
EST: gi|29677880|gb|CB674155.1|CB674155
EST:     GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAG                         GTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAA
genomic: GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAGgtacaagatc ... ttggaaacagGTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAA
EST: gi|58677698|gb|CK066385.1|CK066385
EST:     GCCAAGTTGGGTCCTGCCAGAATTCAGGGAAG                         GTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGNCTTA
genomic: GCCAAGTTGGGTCCTGCCAGAATTCAGGGAAGgtacaagatc ... ttggaaacagGTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAG-CTTA
EST: gi|29630082|gb|CB635091.1|CB635091
EST:     GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAG                         GTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAA
genomic: GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAGgtacaagatc ... ttggaaacagGTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAA
EST: gi|58686392|gb|CK075079.1|CK075079
EST:     GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAG                         GTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAA
genomic: GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAGgtacaagatc ... ttggaaacagGTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAA
EST: gi|29635770|gb|CB640779.1|CB640779
EST:     GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAG                         GTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAA
genomic: GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAGgtacaagatc ... ttggaaacagGTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAA
EST: gi|29626070|gb|CB631081.1|CB631081
EST:     GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAG                         GTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAA
genomic: GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAGgtacaagatc ... ttggaaacagGTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAA
EST: gi|29629686|gb|CB634695.1|CB634695
EST:     GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAG                         GTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAA
genomic: GAGGTAGAGCGTGCTTTAGCCAAGTTGGGTCCTGCCAGAATTCAGGGAAGgtacaagatc ... ttggaaacagGTCCTCTCCAAAAAGAATTGAAGGACCTGATGGGAGAAATCTTCAGCTTAA