1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGGATACCAGAGCTGAGGCATTATGCTCCTAATGTGCCAATCGTATTAGTTGGAACCAAGCTTGgtaagatgacctggcattttttacaaacagaagaaaaaacattggcaacaaaatctgataagaaccgaatacttgcag
species | Oryza sativa |
transcript | LOC_Os02g20850.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAGGCATTATGCTCCTAATGTGCCAATCGTATTAGTTGGAACCAAGCTTG ACTTGCGTGAGGACAAGCAGTTCTTCCTGGACCACCCTGGTCTAGCACCTAEST: gi|33675900|gb|CF304139.1|CF304139
genomic: GAGGCATTATGCTCCTAATGTGCCAATCGTATTAGTTGGAACCAAGCTTGgtaagatgac ... atacttgcagACTTGCGTGAGGACAAGCAGTTCTTCCTGGACCACCCTGGTCTAGCACCTA
EST: GAGGCATTATGCTCCTAATGTGCCAATCGTATTAGTTGGAACCAAGCTTG ACTTGCGTGAGGACAAGCAGTTCTTCCTGGACCACCCTGGTCTAGCACCTAEST: gi|33681463|gb|CF309702.1|CF309702
genomic: GAGGCATTATGCTCCTAATGTGCCAATCGTATTAGTTGGAACCAAGCTTGgtaagatgac ... atacttgcagACTTGCGTGAGGACAAGCAGTTCTTCCTGGACCACCCTGGTCTAGCACCTA
EST: GAGGCATTATGCTCCTAATGTGCCAATCGTATTAGTTGGAACCAAGCTTG ACTTGCGTGAGGACAAGCAGTTCTTCCTGGACCGCCCTGGTCTAGCACCTA
genomic: GAGGCATTATGCTCCTAATGTGCCAATCGTATTAGTTGGAACCAAGCTTGgtaagatgac ... atacttgcagACTTGCGTGAGGACAAGCAGTTCTTCCTGGACCACCCTGGTCTAGCACCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGATACCAGAGCTGAGGCATTATGCTCCTAATGTGCCAATCGTATTAGTTGGAACCAAGCTTGgtaagatgacctggcattttttacaaacagaagaaaaaacattggcaacaaaatctgataagaaccgaatacttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT