Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGCTGAAGTTTGGCAGTATGTTTTCAGTGATTGGTCATCTCTTAAGGCTTCATCCCAATATTACACGTCCTTGATTCTCAAGAATACACTTCAGAAAGgtaggtatttagcactccttagttttttttttcttttttgaaactttagcacttgttagttagttggacaactgccatgaacctaatgagtctcagtcttgcag

Basic information

species Oryza sativa
transcript LOC_Os01g74010.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87031597|gb|CI263970.1|CI263970
EST:     TTCATCCCAATATTACACGTCCTTGATTCTCAAGAATACACTTCAGAAAG                         GGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCATGATGTTAGTGGAA
genomic: TTCATCCCAATATTACACGTCCTTGATTCTCAAGAATACACTTCAGAAAGgtaggtattt ... agtcttgcagGGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCATGATGTTAGTGGAA
EST: gi|88503984|gb|CI431490.1|CI431490
EST:     TTCATCCCAATATTACACGTCCTTGATTCTCAAGAATACACTTCAGAAAG                         GGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCATGATGTTAGTGGAA
genomic: TTCATCCCAATATTACACGTCCTTGATTCTCAAGAATACACTTCAGAAAGgtaggtattt ... agtcttgcagGGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCATGATGTTAGTGGAA
EST: gi|88983074|gb|CI020638.1|CI020638
EST:     TTCATCCCAATATTACACGTCCTTGATTCTCAAGAATACACTTCAGAAAG                         GGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCATGATGTTAGTGGAA
genomic: TTCATCCCAATATTACACGTCCTTGATTCTCAAGAATACACTTCAGAAAGgtaggtattt ... agtcttgcagGGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCATGATGTTAGTGGAA
EST: gi|88515180|gb|CI442834.1|CI442834
EST:     TTCATCCCAATATTACACGTCCTTGATTCTCAAGAATACACTTCAGAAAG                         GGGGANAATGGGCGAAGAAAGATGATGACGCGCTTCATGATGGTAGTGGAA
genomic: TTCATCCCAATATTACACGTCCTTGATTCTCAAGAATACACTTCAGAAAGgtaggtattt ... agtcttgcagGGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCATGATGTTAGTGGAA
EST: gi|88966132|gb|CI013008.1|CI013008
EST:     TTCATCCCAATATTACACGTCCTTGATTCTCAAGAATACACTTCAGAAAG                         GGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCATGATGTTAGTGGAA
genomic: TTCATCCCAATATTACACGTCCTTGATTCTCAAGAATACACTTCAGAAAGgtaggtattt ... agtcttgcagGGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCATGATGTTAGTGGAA
EST: gi|86595529|gb|CI264626.1|CI264626
EST:     TTCATCCCAATATTACACGTCCTTGATTCTCAAGAATACACTTCAGAAAG                         GGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCATGATGTTAGTGGAA
genomic: TTCATCCCAATATTACACGTCCTTGATTCTCAAGAATACACTTCAGAAAGgtaggtattt ... agtcttgcagGGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCATGATGTTAGTGGAA
EST: gi|86542295|gb|CI182501.1|CI182501
EST:     TTCATCCCAATATTACACGTCCTTGATTCTCAAGAATACACTTCAGAAAG                         GGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCATGATGTTAGTGGAA
genomic: TTCATCCCAATATTACACGTCCTTGATTCTCAAGAATACACTTCAGAAAGgtaggtattt ... agtcttgcagGGGGAAAATGGGCGAAGAAAGATGATGACGCGCTTCATGATGTTAGTGGAA