1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TACTTGCGTGACTATTCCACATTTTCTGCTACTGCTCGCTACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAGgtattgttattgaggagtactcatatttattgttccagtgggtatacagaagttgtagataccgtagtaaaatactccattctgcaatcacag
species | Oryza sativa |
transcript | LOC_Os01g70140.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGTTGAGAAGTGTTEST: gi|88203348|gb|CI203197.1|CI203197
genomic: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAGgtattgttat ... gcaatcacagGTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTT
EST: ACTGGGCGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTTEST: gi|86529021|gb|CI169227.1|CI169227
genomic: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAGgtattgttat ... gcaatcacagGTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTT
EST: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTTEST: gi|88239054|gb|CI240216.1|CI240216
genomic: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAGgtattgttat ... gcaatcacagGTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTT
EST: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTTEST: gi|87035145|gb|CI189767.1|CI189767
genomic: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAGgtattgttat ... gcaatcacagGTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTT
EST: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTTEST: gi|86850828|gb|CI338804.1|CI338804
genomic: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAGgtattgttat ... gcaatcacagGTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTT
EST: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTTEST: gi|86483899|gb|CI126532.1|CI126532
genomic: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAGgtattgttat ... gcaatcacagGTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTT
EST: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTTEST: gi|88205918|gb|CI205767.1|CI205767
genomic: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAGgtattgttat ... gcaatcacagGTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTT
EST: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTTEST: gi|86599379|gb|CI251337.1|CI251337
genomic: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAGgtattgttat ... gcaatcacagGTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTT
EST: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTTEST: gi|86418458|gb|CI032667.1|CI032667
genomic: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAGgtattgttat ... gcaatcacagGTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTT
EST: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTTEST: gi|88455407|gb|CI519428.1|CI519428
genomic: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAGgtattgttat ... gcaatcacagGTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTT
EST: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTTEST: gi|86542895|gb|CI183101.1|CI183101
genomic: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAGgtattgttat ... gcaatcacagGTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTT
EST: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTTEST: gi|86543948|gb|CI184154.1|CI184154
genomic: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAGgtattgttat ... gcaatcacagGTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTT
EST: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTTEST: gi|86507774|gb|CI150407.1|CI150407
genomic: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAGgtattgttat ... gcaatcacagGTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTT
EST: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTTEST: gi|3762498|gb|AU029250.1|AU029250
genomic: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAGgtattgttat ... gcaatcacagGTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTT
EST: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGNATGGAAGAAAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTTEST: gi|88472915|gb|CI410186.1|CI410186
genomic: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAGgtattgttat ... gcaatcacagGTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTT
EST: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTTEST: gi|88238860|gb|CI236711.1|CI236711
genomic: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAGgtattgttat ... gcaatcacagGTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTT
EST: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTTEST: gi|88264444|gb|CI368218.1|CI368218
genomic: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAGgtattgttat ... gcaatcacagGTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTT
EST: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTTEST: gi|3762499|gb|AU029251.1|AU029251
genomic: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAGgtattgttat ... gcaatcacagGTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTT
EST: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAG GTGCAGAAGNTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTTEST: gi|88212778|gb|CI212418.1|CI212418
genomic: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAGgtattgttat ... gcaatcacagGTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTT
EST: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTTEST: gi|3767494|gb|AU031604.1|AU031604
genomic: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAGgtattgttat ... gcaatcacagGTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTT
EST: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTTEST: gi|86841946|gb|CI338356.1|CI338356
genomic: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAGgtattgttat ... gcaatcacagGTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGTT
EST: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAG GTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTGGT
genomic: ACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAGgtattgttat ... gcaatcacagGTGCAGAAGCTGGTTGAGATGGGCTTCCCTGAAGACATGGTGAGAAGTG-T
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACTTGCGTGACTATTCCACATTTTCTGCTACTGCTCGCTACTGGACGGAGGCCTTTGCAAAGAATTCCTCCACCGGCATGGAAGAAAAGgtattgttattgaggagtactcatatttattgttccagtgggtatacagaagttgtagataccgtagtaaaatactccattctgcaatcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA