1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGATTGGGGGTGGTTCACTTCTGACTAACGCATCCAGCAGTCTCTGAGTTGTCATTTCATTCAGAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAGgtaactaaccgaagctcatctctgcaccctccaatacctgatacggcaatttgttactactgccagattgtgtgcttagaaagtccatcaagtaccaaac...
species | Oryza sativa |
transcript | LOC_Os01g64170.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAG GAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATAEST: gi|218497333|gb|FG955293.1|FG955293
genomic: AGAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAGgtaactaacc ... tatgatgcagGAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATA
EST: GTCATTTCATTCAGAGCCGGCCGATTGCATGTGTACGTCCTGACAGCAAG GAGACTGAGAATATATACTAGATTCTGAATGGACATCEST: gi|88297945|gb|CI555960.1|CI555960
genomic: GTCATTTCATTCAGAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAGgtaactaacc ... tatgatgcagGAGACTGAGAATTTATACTAG-TTCTGAATGGACATC
EST: GCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAG GAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATAEST: gi|88504005|gb|CI431511.1|CI431511
genomic: GCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAGgtaactaacc ... tatgatgcagGAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATA
EST: GAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAG GAGACTGAGNATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATAEST: gi|29643278|gb|CB648285.1|CB648285
genomic: GAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAGgtaactaacc ... tatgatgcagGAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATA
EST: GTCATTTCATTCAGAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAG GAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATAEST: gi|33680923|gb|CF309162.1|CF309162
genomic: GTCATTTCATTCAGAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAGgtaactaacc ... tatgatgcagGAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATA
EST: GTCATTTCATTCAGAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAG GAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATAEST: gi|88477642|gb|CI414913.1|CI414913
genomic: GTCATTTCATTCAGAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAGgtaactaacc ... tatgatgcagGAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATA
EST: CGTCCTGACAGCAAG GAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATAEST: gi|86869004|gb|CI335571.1|CI335571
genomic: CGTCCTGACAGCAAGgtaactaacc ... tatgatgcagGAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATA
EST: GTCATTTCATTCAGAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAG GAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATAEST: gi|33683525|gb|CF311764.1|CF311764
genomic: GTCATTTCATTCAGAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAGgtaactaacc ... tatgatgcagGAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATA
EST: GTCATTTCATTCAGAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAG GAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATAEST: gi|86896027|gb|CI330035.1|CI330035
genomic: GTCATTTCATTCAGAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAGgtaactaacc ... tatgatgcagGAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATA
EST: GTCATTTCATTCAGAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAG GAGACTGAGAATTTATACTAGTTCTGAAT-GACATCGAGATCTTTACTATAEST: gi|88276178|gb|CI396782.1|CI396782
genomic: GTCATTTCATTCAGAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAGgtaactaacc ... tatgatgcagGAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATA
EST: TCAGAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAG GAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATAEST: gi|86834939|gb|CI346023.1|CI346023
genomic: TCAGAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAGgtaactaacc ... tatgatgcagGAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATA
EST: GTCATTTCATTCAGAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAG GAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATAEST: gi|13818898|gb|AB060278.1|AB060278
genomic: GTCATTTCATTCAGAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAGgtaactaacc ... tatgatgcagGAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATA
EST: GTCATTTCATTCAGAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAG GAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATAEST: gi|88482507|gb|CI419778.1|CI419778
genomic: GTCATTTCATTCAGAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAGgtaactaacc ... tatgatgcagGAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATA
EST: GTCATTTCATTCAGAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAG GAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATAEST: gi|33680924|gb|CF309163.1|CF309163
genomic: GTCATTTCATTCAGAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAGgtaactaacc ... tatgatgcagGAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATA
EST: GTCATTTCATTCAGAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAG GAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATAEST: gi|88517803|gb|CI444372.1|CI444372
genomic: GTCATTTCATTCAGAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAGgtaactaacc ... tatgatgcagGAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATA
EST: CCGATTGCATGTGTTCGTCCTGACAGCAAG GAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATAEST: gi|88515448|gb|CI443102.1|CI443102
genomic: CCGATTGCATGTGTTCGTCCTGACAGCAAGgtaactaacc ... tatgatgcagGAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATA
EST: GATTGCATGTGTTCGTCCTGACAGCAAG GAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATAEST: gi|88490195|gb|CI427467.1|CI427467
genomic: GATTGCATGTGTTCGTCCTGACAGCAAGgtaactaacc ... tatgatgcagGAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATA
EST: GTCATTTCATTCAGANCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAG GAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATAEST: gi|88517012|gb|CI444666.1|CI444666
genomic: GTCATTTCATTCAGAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAGgtaactaacc ... tatgatgcagGAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATA
EST: GATTGCATGTGTTCGTCCTGACAGCAAG GAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATAEST: gi|58690098|gb|CK078785.1|CK078785
genomic: GATTGCATGTGTTCGTCCTGACAGCAAGgtaactaacc ... tatgatgcagGAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATA
EST: GTCATTTCATTCAGAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAG GAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATAEST: gi|88366386|gb|CI553784.1|CI553784
genomic: GTCATTTCATTCAGAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAGgtaactaacc ... tatgatgcagGAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATA
EST: GTGTTCGTCCTGACAGCAAG GAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATAEST: gi|88506735|gb|CI434241.1|CI434241
genomic: GTGTTCGTCCTGACAGCAAGgtaactaacc ... tatgatgcagGAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATA
EST: GTCATTTCATTCAGAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAG GAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATAEST: gi|88255227|gb|CI354051.1|CI354051
genomic: GTCATTTCATTCAGAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAGgtaactaacc ... tatgatgcagGAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATA
EST: GTCATTTCATTCAGAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAG GAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATAEST: gi|86836519|gb|CI348388.1|CI348388
genomic: GTCATTTCATTCAGAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAGgtaactaacc ... tatgatgcagGAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATA
EST: GTCATTTCATTCAGAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAG GAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATA
genomic: GTCATTTCATTCAGAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAGgtaactaacc ... tatgatgcagGAGACTGAGAATTTATACTAGTTCTGAATGGACATCGAGATCTTTACTATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATTGGGGGTGGTTCACTTCTGACTAACGCATCCAGCAGTCTCTGAGTTGTCATTTCATTCAGAGCCGGCCGATTGCATGTGTTCGTCCTGACAGCAAGgtaactaaccgaagctcatctctgcaccctccaatacctgatacggcaatttgttactactgccagattgtgtgcttagaaagtccatcaagtaccaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caccctc