1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GATGGGATCCCTATTGGAAGGAAAATAGACCTTGCAGCCTATAACAGCTATGATGGGCTATCGTCAGCTGTCAAACAACTCTTCCATGGGTTTCTTCAAGgtagaaattaacaatctatccaaataaaataagtacttcattttttataaaattcttagcttttatctgatcatattgcagctcaaaaggaccaaactaatgcgcaaattgcacag
species | Oryza sativa |
transcript | LOC_Os01g53880.7 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GATGGGCTATCGTCAGCTGTCAAACAACTCTTCCACTGGGTTTCTTCAAG CEST: gi|18387819|gb|BM421017.1|BM421017
genomic: GATGGGCTATCGTCAGCTGTCAAACAACTCTTCCA-TGGGTTTCTTCAAGgtagaaatta ... aattgcacag-
EST: GATGGGCTATCGTCAGCTGTCAAACAACTCTTCCACTGGGTTTCTTCAAG C
genomic: GATGGGCTATCGTCAGCTGTCAAACAACTCTTCCA-TGGGTTTCTTCAAGgtagaaatta ... aattgcacag-
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGGGATCCCTATTGGAAGGAAAATAGACCTTGCAGCCTATAACAGCTATGATGGGCTATCGTCAGCTGTCAAACAACTCTTCCATGGGTTTCTTCAAGgtagaaattaacaatctatccaaataaaataagtacttcattttttataaaattcttagcttttatctgatcatattgcagctcaaaaggaccaaactaatgcgcaaattgcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG