1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCTCTTGCTAGGATGAACAAGAAGGACTCATGGCTGTTCTGGTGGACTCTGTACTTGACTgtaagtgatattctccactatgattcagcgtttttagtttctagtatccgtatatgaatatatacaatttcattcagtttatatatgaacacattgggaa...
species | Oryza sativa |
transcript | LOC_Os01g22870.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGATGAACAAGAAGGACTCATGGCTGTTCTGGTGGACTCTGTACTTGACT GCTGGTGCATGGATTGTEST: gi|33680657|gb|CF308896.1|CF308896
genomic: GGATGAACAAGAAGGACTCATGGCTGTTCTGGTGGACTCTGTACTTGACTgtaagtgata ... catgtttcagGCTGCTGCATGGATTGT
EST: GGATGAACAAGAAGGACTCATGGCTGTTCTGGTGGACTCTGTACTTGACT GCTGCTGCATGGATTGTTCTTGGGATATTCTCACTCATCAGACTTCATGCTEST: gi|29678098|gb|CB674373.1|CB674373
genomic: GGATGAACAAGAAGGACTCATGGCTGTTCTGGTGGACTCTGTACTTGACTgtaagtgata ... catgtttcagGCTGCTGCATGGATTGTTCTTGGGATATTCTCACTCATCAGACTTCATGCT
EST: GGATGAACAAGAAGGACTCATGGCTGTTCTGGTGGACTCTGTACTTGACT GCTGCTGCATGGATTGTTCTTGGGATATTCTCACTCATCAGACTTCATGCTEST: gi|66913390|gb|CX100238.1|CX100238
genomic: GGATGAACAAGAAGGACTCATGGCTGTTCTGGTGGACTCTGTACTTGACTgtaagtgata ... catgtttcagGCTGCTGCATGGATTGTTCTTGGGATATTCTCACTCATCAGACTTCATGCT
EST: GGATGAACAAGAAGGACTCATGGCTGTTCTGGTGGACTCTGTACTTGACT GCTGCTGCATGGATTGTTCTTGGGATATTCTCACTEST: gi|88417344|gb|CI579005.1|CI579005
genomic: GGATGAACAAGAAGGACTCATGGCTGTTCTGGTGGACTCTGTACTTGACTgtaagtgata ... catgtttcagGCTGCTGCATGGATTGTTCTTGGGATATTCTCACT
EST: GGATGAACAAGAAGGACTCATGGCTGTTCTGGTGGACTCTGTACTTGACT GCTGCTGCATGGATTGEST: gi|33680658|gb|CF308897.1|CF308897
genomic: GGATGAACAAGAAGGACTCATGGCTGTTCTGGTGGACTCTGTACTTGACTgtaagtgata ... catgtttcagGCTGCTGCATGGATTG
EST: GACTCTGTACTTGACT GCTGCTGCATGGATTGTTCTTGGGATATTCTCACTCATCAGACTTCATGCTEST: gi|44679016|gb|CR292450.1|CR292450
genomic: GACTCTGTACTTGACTgtaagtgata ... catgtttcagGCTGCTGCATGGATTGTTCTTGGGATATTCTCACTCATCAGACTTCATGCT
EST: GGATGAACAAGAAGGACTCATGGCTGTTCTGGTGGACTCTGTACTTGACT GCTGCTGCATGGATTGTTCTTGGGATATTCTCACTCATCAGACTTCATGCTEST: gi|29678099|gb|CB674374.1|CB674374
genomic: GGATGAACAAGAAGGACTCATGGCTGTTCTGGTGGACTCTGTACTTGACTgtaagtgata ... catgtttcagGCTGCTGCATGGATTGTTCTTGGGATATTCTCACTCATCAGACTTCATGCT
EST: GGATGAACAAGAAGGACTCATGGCTGTTCTGGTGGACTCTGTACTTGACT GCTGCTGCATGGATTGTTCTTGGGATATTCTCACTCATCAGACTTCATGCTEST: gi|27920913|gb|CB096721.1|CB096721
genomic: GGATGAACAAGAAGGACTCATGGCTGTTCTGGTGGACTCTGTACTTGACTgtaagtgata ... catgtttcagGCTGCTGCATGGATTGTTCTTGGGATATTCTCACTCATCAGACTTCATGCT
EST: GGATGAACAAGAAGGACTCATGGCTGTTCTGGTGGACTCTGTACTTGACT GCTGCTGCATGGATTGTTCTTGGGATATTCTCACTCATCAGACTTCATGCTEST: gi|86887714|gb|CI311847.1|CI311847
genomic: GGATGAACAAGAAGGACTCATGGCTGTTCTGGTGGACTCTGTACTTGACTgtaagtgata ... catgtttcagGCTGCTGCATGGATTGTTCTTGGGATATTCTCACTCATCAGACTTCATGCT
EST: AAGGACTTCATGGCTGTTCTGGTGGACTCTGTACTTGACT GCTGCTGCATGGATTGTTCTTGGGATATTCTCACTCATCAGACTTCATGCTEST: gi|218478253|gb|FG951116.1|FG951116
genomic: AAGGAC-TCATGGCTGTTCTGGTGGACTCTGTACTTGACTgtaagtgata ... catgtttcagGCTGCTGCATGGATTGTTCTTGGGATATTCTCACTCATCAGACTTCATGCT
EST: GGATGAACAAGAAGGACTCATGGCTGTTCTGGTGGACTCTGTACTTGACT GCTGCTGCATGGATTGTTCTTGGGATATTCTCACTCATCAGACTTCATGCT
genomic: GGATGAACAAGAAGGACTCATGGCTGTTCTGGTGGACTCTGTACTTGACTgtaagtgata ... catgtttcagGCTGCTGCATGGATTGTTCTTGGGATATTCTCACTCATCAGACTTCATGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTCTTGCTAGGATGAACAAGAAGGACTCATGGCTGTTCTGGTGGACTCTGTACTTGACTgtaagtgatattctccactatgattcagcgtttttagtttctagtatccgtatatgaatatatacaatttcattcagtttatatatgaacacattgggaa
- - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - GGTGGA