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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCACTGCTCCGCTTATGACGTTCCCGTCGACGGCGAGGGTGGCGGCGGAGCCACTCGGCGTCGTGCTCGTCATCTCGGCCTGGAACTACCCTTTCTgtaagttggaccaaaaccaaattaacattcacatatgatttgatctttctttcatagaaaagtaattaatttactgcgtgccttgaacatttttaactca...

Basic information

species Oryza sativa
transcript LOC_Os12g07810.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g07810.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G103546_T02 (Zea mays), 5'ss of exon 2
---GTCACTGCTCCGCTTATGACGTTCCCGTCGACGGCGAGGGTGGCGGCGGAGCCACTCGGCGTCGTGCTCGTCATCTCGGCCTGGAACTACCCTTTCTgtaagttggaccaaaaccaa-attaacat-----tcacatatgatttgatctttctttcatagaaaagtaattaatttactgcgtgccttga-acatttttaactca
   ||| | |    |||  |||| ||||||||| |||| || || ||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||| ||| |     |||||  ||||  |      |||| ||| ||   ||| | |||| ||  |      |||        |  ||  || |  |     | |    
CAGGTCCCCGGCGGGCTGCTGACCTTCCCGTCGGCGGCCAGCGTCGCGGCGGAGCCTCTCGGCGTCGTGCTCGTCATCTCCGCCTGGAACTACCCCTTCTgtacgttcgtaattaaccagcattattacccccgtcacctatcatgc-atcatgcttttatttagtccccatt--ccagtcgtttgagttaatgcgcgcatga----

upper sequence: LOC_Os12g07810.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G103546_T01 (Zea mays), 5'ss of exon 3
GTCACTGCTCCGCTTATGACGTTCCCGTCGACGGCGAGGGTGGCGGCGGAGCCACTCGGCGTCGTGCTCGTCATCTCGGCCTGGAACTACCCTTTCTgtaagttggaccaaaaccaa-attaacat-----tcacatatgatttgatctttctttcatagaaaagtaattaatttactgcgtgccttga-acatttttaactca
||| | |    |||  |||| ||||||||| |||| || || ||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||| ||| |     |||||  ||||  |      |||| ||| ||   ||| | |||| ||  |      |||        |  ||  || |  |     | |    
GTCCCCGGCGGGCTGCTGACCTTCCCGTCGGCGGCCAGCGTCGCGGCGGAGCCTCTCGGCGTCGTGCTCGTCATCTCCGCCTGGAACTACCCCTTCTgtacgttcgtaattaaccagcattattacccccgtcacctatcatgc-atcatgcttttatttagtccccatt--ccagtcgtttgagttaatgcgcgcatga----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38476741|gb|CF960874.1|CF960874
EST:     GGAGCCACTCGGCGTCGTGCTCATCATCTCGGCCTGGAACTACCCTTTCT                         TGCTGTCGATCGACCCGATCATCGGAGCGATCGCCGCCGGCAACGCCGTGG
genomic: GGAGCCACTCGGCGTCGTGCTCGTCATCTCGGCCTGGAACTACCCTTTCTgtaagttgga ... tccatttcagTGCTGTCGATCGACCCGATCATCGGAGCGATCGCCGCCGGCAACGCCGTGG