1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTAGCCAGGAATTTGGGGAAGACTTTGCGTGCTTTCCAGCCAACCATTAGAGAGCTACAGgttggtttgtgacttgtctgatgtgattccttgatacatatgtaacgtgtctcttttttccgcatatag
species | Oryza sativa |
transcript | LOC_Os11g37130.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATTTGGGGAAGACTTTGCGTGCTTTCCAGCCAACCATTAGAGAGCTACAG GATGTTTCAAGGGAGTTCAGGAGCACTCTTGAACGAGAAATTGGAC-T--TEST: gi|29663432|gb|CB659707.1|CB659707
genomic: ATTTGGGGAAGACTTTGCGTGCTTTCCAGCCAACCATTAGAGAGCTACAGgttggtttgt ... ccgcatatagGATGTTTCAAGGGAGTTCAGGAGCACTCTTGAACGAGAAATTGGACTTGAT
EST: ATTTGGGGAAGACTTTGCGTGCTTTCCAGCCAACCATTAGAGAGCTACAG GATGTTTCAAGGGAGTTCAGGAGCACTCTTGAACGAGAAATTGGACTTGATEST: gi|88691337|gb|CI733921.1|CI733921
genomic: ATTTGGGGAAGACTTTGCGTGCTTTCCAGCCAACCATTAGAGAGCTACAGgttggtttgt ... ccgcatatagGATGTTTCAAGGGAGTTCAGGAGCACTCTTGAACGAGAAATTGGACTTGAT
EST: TTTGCGTGCTTTCCAGCCAACCATTAGAGAGCTACAG GATGTTTCAAGGGAGTTCAGGAGCACTCTTGAACGAGAAATTGGACTTGATEST: gi|88594536|gb|CI714494.1|CI714494
genomic: TTTGCGTGCTTTCCAGCCAACCATTAGAGAGCTACAGgttggtttgt ... ccgcatatagGATGTTTCAAGGGAGTTCAGGAGCACTCTTGAACGAGAAATTGGACTTGAT
EST: ATTTGGGGAAGACTTTGCGTGCTTTCCAGCCAACCATTAGAGAGCTACAG GATGTTTCAAGGGAGTTCAGGAGCACTCTTGAACGAGAAATTGGAC-T--TEST: gi|88593428|gb|CI713382.1|CI713382
genomic: ATTTGGGGAAGACTTTGCGTGCTTTCCAGCCAACCATTAGAGAGCTACAGgttggtttgt ... ccgcatatagGATGTTTCAAGGGAGTTCAGGAGCACTCTTGAACGAGAAATTGGACTTGAT
EST: ATTTGGGGAAGACTTTGCGTGCTTTCCAGCCAACCATTAGAGAGCTACAG GATGTTTCAAGGGAGTTCAGGAGCACTCTTGAACGAGAAATTGGAC-T--TEST: gi|88689432|gb|CI733008.1|CI733008
genomic: ATTTGGGGAAGACTTTGCGTGCTTTCCAGCCAACCATTAGAGAGCTACAGgttggtttgt ... ccgcatatagGATGTTTCAAGGGAGTTCAGGAGCACTCTTGAACGAGAAATTGGACTTGAT
EST: TTTGCGTGCTTTCCAGCCAACCATTACAGAGCTACAG GATGTTTCAAGGGAGTTCAGGAGCACTCTTGAACGAGAAATTGGACTTGAT
genomic: TTTGCGTGCTTTCCAGCCAACCATTAGAGAGCTACAGgttggtttgt ... ccgcatatagGATGTTTCAAGGGAGTTCAGGAGCACTCTTGAACGAGAAATTGGACTTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAGCCAGGAATTTGGGGAAGACTTTGCGTGCTTTCCAGCCAACCATTAGAGAGCTACAGgttggtttgtgacttgtctgatgtgattccttgatacatatgtaacgtgtctcttttttccgcatatag
- - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT