1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGCAGTGGTGGAGGGAGACCATGGGGTGGCCCTCGATGAGGTCGGCCCCGGGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgcttggaatgagctaggaggggttggagtttgggttccatatgtagttgcttggtgcttgggggttagttagggtggctatgaagttttgatgatgagaggggtattgatgtttgggttgcattcatggtgatgtag
species | Oryza sativa |
transcript | LOC_Os11g28300.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAG ATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCCEST: gi|88569792|gb|CI660967.1|CI660967
genomic: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgctt ... ggtgatgtagATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCC
EST: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAG ATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCEST: gi|88337293|gb|CI629583.1|CI629583
genomic: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgctt ... ggtgatgtagATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCC
EST: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAG ATTGGAGATGAAACCTTTATTATTGEST: gi|88307114|gb|CI640549.1|CI640549
genomic: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgctt ... ggtgatgtagATTGGAGATGAAACCTTTATTATTG
EST: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAG ATTGGAGATGAAACCTTTATTATTGCGGCGCEST: gi|88307842|gb|CI646277.1|CI646277
genomic: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgctt ... ggtgatgtagATTGGAGATGAAACCTTTATTATTGCGGCGC
EST: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAG ATTGGAGATGAAACCTTTATTATTGCGGCGEST: gi|88380713|gb|CI634738.1|CI634738
genomic: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgctt ... ggtgatgtagATTGGAGATGAAACCTTTATTATTGCGGCG
EST: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAG ATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCCEST: gi|88426536|gb|CI579365.1|CI579365
genomic: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgctt ... ggtgatgtagATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCC
EST: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAG ATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCCEST: gi|88349790|gb|CI634325.1|CI634325
genomic: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgctt ... ggtgatgtagATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCC
EST: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAG ATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCCEST: gi|88353912|gb|CI634703.1|CI634703
genomic: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgctt ... ggtgatgtagATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCC
EST: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAG ATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGEST: gi|88851485|gb|CI670925.1|CI670925
genomic: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgctt ... ggtgatgtagATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGG
EST: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAG ATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCCEST: gi|88324987|gb|CI645001.1|CI645001
genomic: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgctt ... ggtgatgtagATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCC
EST: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAG ATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCEST: gi|88403187|gb|CI570928.1|CI570928
genomic: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgctt ... ggtgatgtagATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGC
EST: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAG ATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGEST: gi|88390701|gb|CI609326.1|CI609326
genomic: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgctt ... ggtgatgtagATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCG
EST: CCTGTTCGATGCGCTCTTCGCCGAGTCTCTCGATGATCTTAGTCAGCGAG ATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCCEST: gi|88333978|gb|CI645392.1|CI645392
genomic: C-TGTTCGATGCGCTCTTCGC-GAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgctt ... ggtgatgtagATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCC
EST: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAG ATTGGAGATGAAAEST: gi|44678067|gb|CR291501.1|CR291501
genomic: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgctt ... ggtgatgtagATTGGAGATGAAA
EST: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAG ATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCCEST: gi|88415654|gb|CI591434.1|CI591434
genomic: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgctt ... ggtgatgtagATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCC
EST: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAG ATTGGAGATGAAACCTTTATTATTGCGGGGCTAAEST: gi|88401571|gb|CI588512.1|CI588512
genomic: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgctt ... ggtgatgtagATTGGAGATGAAACCTTTATTATTGCGGCGCTAA
EST: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAG ATTGGAGATGAAACCTTTATTATTEST: gi|88311914|gb|CI577520.1|CI577520
genomic: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgctt ... ggtgatgtagATTGGAGATGAAACCTTTATTATT
EST: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAG ATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCCEST: gi|88307697|gb|CI644736.1|CI644736
genomic: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgctt ... ggtgatgtagATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCC
EST: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAG ATTGGAGATGAAACCTTTATTATTGEST: gi|88335550|gb|CI642774.1|CI642774
genomic: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgctt ... ggtgatgtagATTGGAGATGAAACCTTTATTATTG
EST: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAG ATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCCEST: gi|218479784|gb|FG960708.1|FG960708
genomic: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgctt ... ggtgatgtagATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCC
EST: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAG ATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCCEST: gi|88372059|gb|CI641694.1|CI641694
genomic: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgctt ... ggtgatgtagATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCC
EST: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAG ATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGEST: gi|33677157|gb|CF305396.1|CF305396
genomic: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgctt ... ggtgatgtagATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATG
EST: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAG ATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCCEST: gi|66912648|gb|CX099496.1|CX099496
genomic: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgctt ... ggtgatgtagATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCC
EST: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAG ATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCCEST: gi|58589289|gb|CF987597.1|CF987597
genomic: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgctt ... ggtgatgtagATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCC
EST: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAG ATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCCEST: gi|88348558|gb|CI634153.1|CI634153
genomic: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgctt ... ggtgatgtagATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCC
EST: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAG ATTGGAGATGAAACCTTTAEST: gi|88413071|gb|CI578922.1|CI578922
genomic: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgctt ... ggtgatgtagATTGGAGATGAAACCTTTA
EST: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAG ATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGEST: gi|42592205|gb|CK738691.1|CK738691
genomic: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgctt ... ggtgatgtagATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGG
EST: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAG ATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCCEST: gi|88400467|gb|CI593542.1|CI593542
genomic: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgctt ... ggtgatgtagATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCC
EST: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAG ATTGGAGATGAAACCTTTATTATTGCGGGGCTAAEST: gi|88422996|gb|CI615296.1|CI615296
genomic: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgctt ... ggtgatgtagATTGGAGATGAAACCTTTATTATTGCGGCGCTAA
EST: GCTGTTCGATGCGCTCTTCGCGAGTCTCTCGAATGATCTTAGTCAGCGAG ATTGGAGATGAAACCTTTATTATTGCGEST: gi|87023908|gb|CI288261.1|CI288261
genomic: GCTGTTCGATGCGCTCTTCGCGAGTCTCTCGA-TGATCTTAGTCAGCGAGgtacttgctt ... ggtgatgtagATTGGAGATGAAACCTTTATTATTGCG
EST: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAG ATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCCEST: gi|88340660|gb|CI647464.1|CI647464
genomic: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgctt ... ggtgatgtagATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCC
EST: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAG ATTGGAGATGAAACCTTTATTATTGCEST: gi|33687017|gb|CF315256.1|CF315256
genomic: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgctt ... ggtgatgtagATTGGAGATGAAACCTTTATTATTGC
EST: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAG ATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGTAATGCGGCACCCCEST: gi|88315632|gb|CI615504.1|CI615504
genomic: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgctt ... ggtgatgtagATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCC
EST: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAG ATTGGAGATGAAACCTTTATTATTGCGGCGCTEST: gi|88353597|gb|CI632988.1|CI632988
genomic: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgctt ... ggtgatgtagATTGGAGATGAAACCTTTATTATTGCGGCGCT
EST: GGCTGTCCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAG ATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCC
genomic: GGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgctt ... ggtgatgtagATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCAGTGGTGGAGGGAGACCATGGGGTGGCCCTCGATGAGGTCGGCCCCGGGCTGTTCGATGCGCTCTTCGCGAGTCTCTCGATGATCTTAGTCAGCGAGgtacttgcttggaatgagctaggaggggttggagtttgggttccatatgtagttgcttggtgcttgggggttagttagggtggctatgaagttttgatgatgagaggggtattgatgtttgggttgcattcatggtgatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT