1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGCGATCCATAGTGTTTGTGCTGCGACGAAATGTGCAGCTCATACATCCAGAGgtttgtgaattgttgctaatttgatgatcagattgatgctgcagttcatttaagttatggtggtattaagcaatattctaccgcag
species | Oryza sativa |
transcript | LOC_Os10g39220.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAATGTGCAGCTCATACATCCAGAG ATACTTCAACATGTGCTTCTAGATATGCCCGGGCTCGCATTCTTCACGACGEST: gi|218501789|gb|FG963428.1|FG963428
genomic: AAATGTGCAGCTCATACATCCAGAGgtttgtgaat ... tctaccgcagATACTTCAACATGTGCTTCTAGATATGCCCGGGCTCGCATTCTTCACGACG
EST: GATCCATAGTGTTTGTGCTGCGACGAAATGTGCAGCTCATACATCCAGAG ATACTTCAACATGTGCTTCTAGATATGCCCGGGCTCGCATTCTTCACGACGEST: gi|29663945|gb|CB660220.1|CB660220
genomic: GATCCATAGTGTTTGTGCTGCGACGAAATGTGCAGCTCATACATCCAGAGgtttgtgaat ... tctaccgcagATACTTCAACATGTGCTTCTAGATATGCCCGGGCTCGCATTCTTCACGACG
EST: ACGAAATGTGCAGCTCATACATCCAGAG ATACTTCAACATGTGCTTCTAGATATGCCCGGGCTCGCATTCTTCACGACGEST: gi|218494016|gb|FG950655.1|FG950655
genomic: ACGAAATGTGCAGCTCATACATCCAGAGgtttgtgaat ... tctaccgcagATACTTCAACATGTGCTTCTAGATATGCCCGGGCTCGCATTCTTCACGACG
EST: GATCCATAGTGTTTGTGCTGCGACGAAATGTGCAGCTCATACATCCAGAG ATACTTCAACATGTGCTTCTAGATATGCCCGGGCTCGCATTCTTCACGACGEST: gi|218483378|gb|FG949318.1|FG949318
genomic: GATCCATAGTGTTTGTGCTGCGACGAAATGTGCAGCTCATACATCCAGAGgtttgtgaat ... tctaccgcagATACTTCAACATGTGCTTCTAGATATGCCCGGGCTCGCATTCTTCACGACG
EST: GATCCATAGTGTTTCCCCTGCGACGAAATGTGCAGCTCATACATCCAGAG ATACTTCAACATGTGCTTCTAGATATGCCCGGGCTCGCATTCTTCACGACG
genomic: GATCCATAGTGTTTGTGCTGCGACGAAATGTGCAGCTCATACATCCAGAGgtttgtgaat ... tctaccgcagATACTTCAACATGTGCTTCTAGATATGCCCGGGCTCGCATTCTTCACGACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCGATCCATAGTGTTTGTGCTGCGACGAAATGTGCAGCTCATACATCCAGAGgtttgtgaattgttgctaatttgatgatcagattgatgctgcagttcatttaagttatggtggtattaagcaatattctaccgcag
- - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - AGCTCA