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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGATTACTACCTTCGGAAGAAGGTGGCCGCAAGAAGGATTGATCTCAATGTCATCAAGGACGTCGATCTCTACAAGATTGAGCCATGGGATCTGCAAGgtcagtactcagtacagtacgtacatgcatgcatatgatagatgtgtacaatattcgtgtgctaattaagccagcaataattaactgggagtataaccatgcatgcag

Basic information

species Oryza sativa
transcript LOC_Os06g01480.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g01480.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G440219_T01 (Zea mays), 5'ss of exon 1
GTGGATTACTACCTTCGGAAGAAGGTGGCCGCAAGAAGGATTGATCTCAATGTCATCAAGGACGTCGATCTCTACAAGATTGAGCCATGGGATCTGCAAGgtcagtactcagtacagtacgtacatgcatgcatatgatagatgtgtacaatattcgtgtgctaattaagccagcaataattaactgggagtataaccatgcatgcag
||||| ||||||||  |||||||||||||| |||||||||| || |||||||||||||| || |||||||| |||||||| |||||||||||||| |||||||     ||  | |||||| || ||   |   ||| ||| ||      |        || ||  || |     |  |  |||  |  |   | ||  |  |     |
GTGGACTACTACCTCAGGAAGAAGGTGGCCTCAAGAAGGATCGACCTCAATGTCATCAAAGATGTCGATCTTTACAAGATAGAGCCATGGGATCTCCAAGgtc-----tcgat-cagtacatatatctcttgctat-atatatagcagtagcccctccgttcttttttatttgtcg-tggttagtttagttcaaaaataaactaaggg

upper sequence: LOC_Os06g01480.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA11G03340.1 (Glycine max), 5'ss of exon 1
GTGGATTACTACCTTCGGAAGAAGGTGGCCGCAAGAAGGATTGATCTCAATGTCATCAAGGACGTCGATCTCTACAAGATTGAGCCATGGGATCTGCAAGgtcagtactcagtacagtacgtacatgcatgcatatgatagatgtgtacaat---attcgtgtgctaattaagc-cagcaataattaactgggagtataacc-atg-catgcag
|| |||||||| ||| |||| ||||| ||  | | ||||||||||||  || |||| || || ||||||||||| || || |||||||||||||| ||||||  |||     || |   | ||  |   | | ||||||  | || | ||||   |      |    || || | ||| | |  | |  |  |  |||  |  |||  ||  ||
GTTGATTACTATCTTAGGAAAAAGGTAGCTTCTAAAAGGATTGATCTAGATATCATAAAAGATGTCGATCTCTATAAAATCGAGCCATGGGATCTTCAAGgtacgtatgatatataa-gcctagctagcttcttatgattaa-gtctccaattagaaatacatatatataaaccacagtactgctcacatttgtttatttctgatgatatatag

upper sequence: LOC_Os06g01480.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA09G36600.1 (Glycine max), 5'ss of exon 1
GTGGATTACTACCTTCGGAAGAAGGTGGCCGCAAGAAGGATTGATCTCAATGTCATCAAGGACGTCGATCTCTACAAGATTGAGCCATGGGATCTGCAAGgtcagtactcagtacagtacgtacat-gcatgcatatgatagatgtgtacaatattcgtgtgctaattaagccagcaataattaactgggagtataaccatgcatgcag--------
|| |||||||||||| |||||||  | ||  |||| |||||||||||  |||| || || || || || |||||||| ||||||||||||||||| |||||| || ||| |      |   | ||| ||||  | ||  |||| | |   | | |    |||  |  ||       ||   |  | ||    | |      |  |  |         
GTTGATTACTACCTTAGGAAGAAAATTGCTTCAAGGAGGATTGATCTAGATGTGATAAAAGATGTTGACCTCTACAAAATTGAGCCATGGGATCTTCAAGgt-agaactgatcgagttcaattcatagcatctaaattctagaggggcg-attttattggtgaaagatatattgttaactttgcattgtttttttcttttcgttttaaattttaaag

upper sequence: LOC_Os06g01480.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA12G00760.1 (Glycine max), 5'ss of exon 1
GTGGATTACTACCTTCGGAAGAAGGTGGCCGCAAGAAGGATTGATCTCAATGTCATCAAGGACGTCGATCTCTACAAGATTGAGCCATGGGATCTGCAAGgtcagtactcagt------acagtacgtacatgcatgc------atatgatagatgtgtacaatat-tcgtgtgctaattaagccagcaataattaactgg-gagtataaccatgcatgcag
|| |||||||||||| |||||||  |  |  || | |||||||| ||  ||||||| || || || || |||||||| ||||||||||||||||| |||||| |||||| |        | || |  || || || |       || | || | ||      |||| |  | || ||| |    ||    |  ||   |   |  | |||   |  | |   
GTTGATTACTACCTTAGGAAGAAAATTACTTCAGGGAGGATTGACCTAGATGTCATAAAAGATGTTGACCTCTACAAAATTGAGCCATGGGATCTTCAAGgt-agtactgatcgagttcatagcatctaaattcaagagggacaattttattggtgaaagatatatattatttgttaacttcttcatttttttttcttttttgtttttaaattttaaag---

upper sequence: LOC_Os06g01480.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA04G13660.1 (Glycine max), 5'ss of exon 1
GTGGATTACTACCTTCGGAAGAAGGTGGCCGCAAGAAGGATTGATCTCAATGTCATCAAGGACGTCGATCTCTACAAGATTGAGCCATGGGATCTGCAAGgtcagtactcagtacagtacgtacatgcatgcatatgatagatgtgtacaatattcgtgtgctaattaagccagcaataattaactgggagtataaccatgcatgcag
|| |||||||||||  |||||||  |  || ||||||||||||| ||| ||||||| || || || || ||||| || |||||||||||||| || ||||||    | | |      |   |   |  ||  | |   ||| | |  |   | || |||    | |||| |   | | |  |   |    || ||    |        
GTTGATTACTACCTAAGGAAGAAAATTACCTCAAGAAGGATTGACCTCGATGTCATAAAAGATGTGGACCTCTATAAAATTGAGCCATGGGACCTTCAAGgtagtaattaaacttgttttttttttatataaaaaatgtagttattaattttgttagtgaaaaatttaaacttacgacatattttttctcgtttatgtct--------

upper sequence: LOC_Os06g01480.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA17G14700.1 (Glycine max), 5'ss of exon 1
GTGGATTACTACCTTCGGAAGAAGGTGGCCGCAAGAAGGATTGATCTCAATGTCATCAAGGACGTCGATCTCTACAAGATTGAGCCATGGGATCTGCAAGgtcagtactcagtacagtacgtacatgcatgcatatgatagatgtgtacaatatt-cgtgtgctaattaagccagcaataattaactgggagta--taaccatgcatgcag
|| | |||||||||| |||| ||||| ||  | | ||||||||||||  |||||||||| || ||||||||||| || ||||| ||||||||||| |||||| | | ||   ||||   | | |||  ||  |     || ||      || |    || |  || |  |   || |   || ||||   | |   ||  |||| |  |||
GTCGGTTACTACCTTAGGAAAAAGGTAGCGTCTAAAAGGATTGATCTAGATGTCATCAAAGATGTCGATCTCTATAAAATTGAACCATGGGATCTCCAAGgt-aattcttcatacaaagctttcattaatcaaagcattacatacaattaagaacatgtatcatagtatatatagta--tataaactcacatttgttactcatgtaaacag

upper sequence: LOC_Os06g01480.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA06G47680.1 (Glycine max), 5'ss of exon 1
GTGGATTACTACCTTCGGAAGAAGGTGGCCGCAAGAAGGATTGATCTCAATGTCATCAAGGACGTCGATCTCTACAAGATTGAGCCATGGGATCTGCAAGgtcagtactcagtacagtacgtacatgcatgcatatgatagatgtgtacaatattcgtgtgctaattaagccagcaataat-taactgggagtataaccatgcatgcag
|| |||||||||||  ||||||| ||  || ||||| ||||||| ||| ||||||| || || || || ||||| || |||||||||||||| || |||||| |||| | |    |     |   |   |   ||| | | || |  |  ||     | |  || | |||    |||      | |      ||||    |   |    
GTTGATTACTACCTAAGGAAGAAAGTTACCTCAAGAGGGATTGACCTCGATGTCATAAAAGATGTTGACCTCTATAAAATTGAGCCATGGGACCTTCAAGgt-agtaatta----aacttctttttttttttttatcaaaaatattaattattagtttttcttagtgaagaattcaaacccacatcccatgatatatttctcttt----

upper sequence: LOC_Os06g01480.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA05G04250.1 (Glycine max), 5'ss of exon 1
GTGGATTACTACCTTCGGAAGAAGGTGGCCGCAAGAAGGATTGATCTCAATGTCATCAAGGACGTCGATCTCTACAAGATTGAGCCATGGGATCTGCAAGgtcagtactcagtacagtacgtacatgcatgcatatgatagatgtgtaca--atattcgtgtgctaattaagccagcaataattaactgggagtataaccatgcatgcag
|| | |||||||||| |||| ||||| ||  | | ||||||||||||  |||| ||||| || ||||||||||| || ||||| ||||||||||| |||||| | |  |||  | |     ||  |   |  | |  |  |||    | |  || ||  | |  ||| ||   || ||||| ||  |    | | |     |        
GTTGGTTACTACCTTAGGAAAAAGGTAGCGTCTAAAAGGATTGATCTAGATGTGATCAAAGATGTCGATCTCTATAAAATTGAACCATGGGATCTCCAAGgtaattcatcataaaaagctttaattaattaaagagtaatgatacacaaatcatttttttattttaaatatttcatcaatatttttc----atttttctttttt------

upper sequence: LOC_Os06g01480.1 (Oryza sativa), 5'ss of exon 3
lower sequence: AT1G12260.1 (Arabidopsis thaliana), 5'ss of exon 2
GTGGATTACTACCTTCGGAAGAAGGTGGCCGCAAGAAGGATTGATCTCAATGTCATCAAGGACGTCGATCTCTACAAGATTGAGCCATGGGATCTGCAAGgtcagtactcagtacagtacgtacatgcatgcatatgatagatgtgtacaatattcgtgtgctaattaagccagcaataattaactgg-gagtataaccatgcatgcag
|| || ||||||||  |||| || || ||  | |  || || ||  |  || |||| |||||| | ||||| |||||||||||||||||||| || ||||||  |  |  |   ||  |  |  || | |   ||   |   | | |    ||         |    ||| |     | |||   | | |   |||             
GTAGACTACTACCTGAGGAAAAAAGTCGCATCGAAGAGAATAGAAATTGATTTCATAAAGGACATTGATCTTTACAAGATTGAGCCATGGGACCTTCAAGgtttgc-ccaatcccaccatctctatccttcattactttgtctctatttcctaaggaaagattttaaaagtctttttttattcgtttgtggaaatag------------

upper sequence: LOC_Os06g01480.1 (Oryza sativa), 5'ss of exon 3
lower sequence: AT1G62700.1 (Arabidopsis thaliana), 5'ss of exon 1
GTGGATTACTACCTTCGGAAGAAGGTGGCCGCAAGAAGGATTGATCTCAATGTCATCAAGGACGTCGATCTCTACAAGATTGAGCCATGGGATCTGCAAGgtcagtactcagtacagtacgtacatgcatgcatatgatagatgtgtacaatattcgtgtgctaattaag-ccagcaataattaactgggagt-ataaccatgcatgcag
|| || |||||| |  |||| || || ||  |||  || || ||  || || |||||||||| || ||||| ||||||||||||||||| ||||| ||||||       ||| | | | |   |||   |   ||  |  ||| |   |  | ||   ||   ||||||| |   | ||  ||   |     |  | |  ||  |     
GTAGACTACTACTTGAGGAAAAAAGTTGCATCAAAGAGAATAGAAATCGATATCATCAAGGATGTTGATCTTTACAAGATTGAGCCATGTGATCTTCAAGgtttag---caggaaaatcctatcatctctctttagtagtgatat---ccttgttttggtataaattaaggcttacgattgttgttttttctttgtgataatttag----

upper sequence: LOC_Os06g01480.1 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv16s0022g00690.t01 (Vitis vinifera), 5'ss of exon 1
GTGGATTACTACCTTCGGAAGAAGGTGGCCGCAAGAAGGATTGATCTCAATGTCATCAAGGACGTCGATCTCTACAAGATTGAGCCATGGGATCTGCAAGgtcagtactcagtacagtacgtacatgcatgcatatgatagatgtgtacaatattcgtgtgctaattaagccagcaa-----taattaactggg--agtataaccatgcatgcag------
|| |||||||||||  | || |||||  |  ||||||| ||||| ||  ||||||| ||||| || |||||||| || || |||||||||||||| |||||| | | |    |     |   |    |||  |||  ||  |      |  ||    |   |||   ||   | |||     |  ||||| |    |   | ||  || |           
GTAGATTACTACCTCAGAAAAAAGGTTACTTCAAGAAGAATTGACCTAGATGTCATTAAGGATGTTGATCTCTATAAAATAGAGCCATGGGATCTTCAAGgt-attccatgattttacaatcattcccatcaatagaatgaactctatccttagaattaaactacccaaattaacaaatgtattgttaaccgaactaagttgactttgtaaatttgaacag

upper sequence: LOC_Os06g01480.1 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv02s0154g00020.t01 (Vitis vinifera), 5'ss of exon 1
GTGGATTACTACCTTCGGAAGAAGGTGGCCGCAAGAAGGATTGATCTCAATGTCATCAAGGACGTCGATCTCTACAAGATTGAGCCATGGGATCTGCAAGgtcagta---ctcagt---acagtacgtac--atgcatgcatatgatagatgtgtacaatattcgtgtgctaattaagccagcaataattaactgggagtataaccatgcatgcag-------
|| |||||||||||| | || ||||| ||  | ||||||||||||||  ||||||| || || |||||||||||||| ||||||||||||||||| ||||||  |||   || | |   ||||| | | |  |||||| || |    | || |||| | | ||  ||   || |         || |  | |||   |   | |   | | |           
GTCGATTACTACCTTAGAAAAAAGGTTGCTTCGAGAAGGATTGATCTAGATGTCATTAAAGATGTCGATCTCTACAAAATTGAGCCATGGGATCTTCAAGgtatgtagctcttattcctacagtccttccctatgcataca-acagaaaatatgtata-tcttgatgaaatactatgcatcataaaatctgacttccatgttcatttttcttaatttgaatag

upper sequence: LOC_Os06g01480.1 (Oryza sativa), 5'ss of exon 3
lower sequence: PP1S161_73V6.1 (Physcomitrella patens), 5'ss of exon 2
GTGGATTACTACCTTCGGAAGAAGGTGGCCGCAAGAAGGATTGATCTCAATGTCATCAAGGACGTCGATCTCTACAAGATTGAGCCATGGGATCTGCAAGgtcagtactcagt-acagtacgtacatgcatgcatatgatagatgtgtacaat--attcgtgtgctaattaagccag---caataattaactgggagtataaccatgcatgcag---------------------------------------------------------------------------
||||  || |||||||  ||||| ||  | ||  | | ||| || ||  || ||||    ||| | ||||| |||||| ||||||| |||||||| ||||||||||||  | | |  | |  |   |   ||  | || |   |     ||||  | ||||      ||      ||   ||  | | |     |||||||    |  ||  |                                                                            
GTGGGCTATTACCTTCCTAAGAAAGTCACAGCCCGGAAGATCGACCTTGATCTCATTCGCGACCTAGATCTTTACAAGCTTGAGCCGTGGGATCTTCAAGgtcagtacaaactcattgcagttttttttttgtttttgtttttttaaagcaatttactcgttgaaagatatcaatagattcagaagtcagaacagagtataggatttgatcaaaaaccccacaacctgacattgaattcgactctgttcatcctcatctaaacatccgatggtctctttcatggaacag