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TTATGTTGTTATGGAGTATGTCAAATCTGGAGAGTTGTTTGATTACATCGTTGAGAAGGGAAGACTGCAAGAGGAAGAAGCTCGACGCTTTTTCCAGCAGgtaggctttgtaccattttcctggattggtttttaaggaatacactcagtaatcccatctctagttagggtttgcacaagttctaaatgcagcaagtcac...
species | Oryza sativa |
transcript | LOC_Os05g45420.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGAGAAGGGAAGACTGCAAGAGGAAGAAGCTCGACGCTTTTTCCAGCAG ATCATATCTGGTGTTGAATATTGCCATAGAAACATGGTGGTTCATCGTGATEST: gi|58690653|gb|CK079340.1|CK079340
genomic: TTGAGAAGGGAAGACTGCAAGAGGAAGAAGCTCGACGCTTTTTCCAGCAGgtaggctttg ... tttgaattagATCATATCTGGTGTTGAATATTGCCATAGAAACATGGTGGTTCATCGTGAT
EST: TTGAGAAGGGAAGACTGCAAGAGGAAGAAGCTCGACGCTTTTTCCAGCAG ATCATATCTGGTGTTGAATATTGCCATAGAAACATGGTGGTTCATCGTGATEST: gi|58675163|gb|CK063850.1|CK063850
genomic: TTGAGAAGGGAAGACTGCAAGAGGAAGAAGCTCGACGCTTTTTCCAGCAGgtaggctttg ... tttgaattagATCATATCTGGTGTTGAATATTGCCATAGAAACATGGTGGTTCATCGTGAT
EST: TTGAGAAGGGAAGACTGCAAGAGGAAGAAGCTCGACGCTTTTTCCAGCAG ATCATATCTGGTGTTGAATAEST: gi|27576377|gb|CA999071.1|CA999071
genomic: TTGAGAAGGGAAGACTGCAAGAGGAAGAAGCTCGACGCTTTTTCCAGCAGgtaggctttg ... tttgaattagATCATATCTGGTGTTGAATA
EST: TTGAGAAGGGAAGACTGCAAGAGGAAGAAGCTCGACGCTTTTTCCAGCAG ATCATATCTGGTGTTGAATATTGCCATAGAAACATGGTGGTTCATCGTGATEST: gi|27554019|gb|CA997919.1|CA997919
genomic: TTGAGAAGGGAAGACTGCAAGAGGAAGAAGCTCGACGCTTTTTCCAGCAGgtaggctttg ... tttgaattagATCATATCTGGTGTTGAATATTGCCATAGAAACATGGTGGTTCATCGTGAT
EST: TTGAGAAGGGAAGACTGCAAGAGGAAGAAGCTCGACGCTTTTTCCAGCAG ATCATATCTGGTGTTGAATATTGCCATAGAAACATGGTGGTTCATCGTGATEST: gi|58663248|gb|CK051934.1|CK051934
genomic: TTGAGAAGGGAAGACTGCAAGAGGAAGAAGCTCGACGCTTTTTCCAGCAGgtaggctttg ... tttgaattagATCATATCTGGTGTTGAATATTGCCATAGAAACATGGTGGTTCATCGTGAT
EST: TTGAGAAGGGAAGACTGCAAGAGGAAGAAGCTCGACGCTTTTTCCAGCAG ATCATATCTGGTGTTGAATATTGCCATAGAAACATGGTGGTTCATCGTGATEST: gi|13420631|gb|AU174721.1|AU174721
genomic: TTGAGAAGGGAAGACTGCAAGAGGAAGAAGCTCGACGCTTTTTCCAGCAGgtaggctttg ... tttgaattagATCATATCTGGTGTTGAATATTGCCATAGAAACATGGTGGTTCATCGTGAT
EST: GACGCTTTTTCCAGCAG ATCATATCTGGTGTTGAATATTGCCATAGAAACATGGTGGTTCATCGTGATEST: gi|58680130|gb|CK068817.1|CK068817
genomic: GACGCTTTTTCCAGCAGgtaggctttg ... tttgaattagATCATATCTGGTGTTGAATATTGCCATAGAAACATGGTGGTTCATCGTGAT
EST: TTGAGAAGGGAAGACTGCAAGAGGAAGAAGCTCGACGCTTTTTCCAGCAG ATCATATCTGGTGTTGAATATTGCCATAGAAACATGGTGGTTCATCGTGATEST: gi|58674603|gb|CK063290.1|CK063290
genomic: TTGAGAAGGGAAGACTGCAAGAGGAAGAAGCTCGACGCTTTTTCCAGCAGgtaggctttg ... tttgaattagATCATATCTGGTGTTGAATATTGCCATAGAAACATGGTGGTTCATCGTGAT
EST: TTGAGAAGGGAAGACTGCAAGAGGAAGAAGCTCGACGCTTTTTCCAGCAG ATCATATCTGGTGTTGAATATTGCCATAGAAACATGGTGGTTCATCGTGATEST: gi|29680933|gb|CB677208.1|CB677208
genomic: TTGAGAAGGGAAGACTGCAAGAGGAAGAAGCTCGACGCTTTTTCCAGCAGgtaggctttg ... tttgaattagATCATATCTGGTGTTGAATATTGCCATAGAAACATGGTGGTTCATCGTGAT
EST: TTGAGAAGGGAAGACTGCAAGAGGAAGAAGCTCGACGCTTTTTCCAGCAG ATCATATCTGGTGTTGAATATTGCCATAGAAACATGGTGGTTCATCGTGATEST: gi|33675614|gb|CF303853.1|CF303853
genomic: TTGAGAAGGGAAGACTGCAAGAGGAAGAAGCTCGACGCTTTTTCCAGCAGgtaggctttg ... tttgaattagATCATATCTGGTGTTGAATATTGCCATAGAAACATGGTGGTTCATCGTGAT
EST: TTGAGAAGGGAAGACTGCAAGAGGAAGAAGCTCGACGCTTTTTCCAGCAG ATCATATCTGGTGTTGAATATTGCCATAGAAACATGGTGGTTNCATCGTGA
genomic: TTGAGAAGGGAAGACTGCAAGAGGAAGAAGCTCGACGCTTTTTCCAGCAGgtaggctttg ... tttgaattagATCATATCTGGTGTTGAATATTGCCATAGAAACATGGTGGTT-CATCGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATGTTGTTATGGAGTATGTCAAATCTGGAGAGTTGTTTGATTACATCGTTGAGAAGGGAAGACTGCAAGAGGAAGAAGCTCGACGCTTTTTCCAGCAGgtaggctttgtaccattttcctggattggtttttaaggaatacactcagtaatcccatctctagttagggtttgcacaagttctaaatgcagcaagtcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccatctc