Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAAGGCCATCAAGAGGTTCCAGGTGAGGAACATCGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatcttgctaagagctgtctcgttgtccgaaatctgtgtatggattgaacttttcgttgagccaaaaagaacatgttgtttttgttcag

Basic information

species Oryza sativa
transcript LOC_Os05g39960.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g39960.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM5G827266_T02 (Zea mays), 5'ss of exon 3
GACAAGGCCATCAAGAGGTTCCAGGTGAGGAACATCGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatcttgcta-------agagctgtctcgttgtccgaaatctgtgtatggattgaacttttcgttgagccaaaaagaacatgttgtttttgttcag
|||||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||||| || |||||| |||| |||||  |||||  |||       ||| |||| |||||    | |||   | | |      | || ||  ||   | |     ||| ||||  | | | ||||
GACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAACAGGCGGCCATCAGGGACGTCCAGGAAGCATGCGTCTATGATGgtaa--aatctctctattcctctagatctgtttcgtta---gtaataaatctttaatgcaacctgttgttttgacgagggtaaacgtgtt-ctatggctcag

upper sequence: LOC_Os05g39960.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM5G827266_T03 (Zea mays), 5'ss of exon 3
GACAAGGCCATCAAGAGGTTCCAGGTGAGGAACATCGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatcttgcta-------agagctgtctcgttgtccgaaatctgtgtatggattgaacttttcgttgagccaaaaagaacatgttgtttttgttcag-----
|||||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||||| || |||||| |||| |||||  |||||  |||       ||| |||| |||||    | |||   | | |      | || ||  ||   | |     ||| ||||  | | | ||||     
GACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAACAGGCGGCCATCAGGGACGTCCAGGAAGCATGCGTCTATGATGGTAA--Aatctctctattcctctagatctgtttcgtta---gtaataaatctttaatgcaacctgttgttttgacgagggtaaacgtgtt-ctatggctcaggctac

upper sequence: LOC_Os05g39960.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA04G39940.1 (Glycine max), 5'ss of exon 3
GACAAGGCCATCAAGAGGTTCCAGGTGAGGAACATCGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatcttgctaagagctgtctcgttgtccgaaatctgtgtatggattgaacttttcgttgagccaaaaagaacatgttgtttttgttcag--
|||||||| ||||||||||| | |||||||||||| || || ||||| ||  |||| ||||| |||||||| || ||| | ||  ||||    ||||  |     || |    || |      | | | |   |    || |   |||       |   |    |    || || ||     
GACAAGGCTATCAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAGGCTTGTGTCTACGAACgtaattt-tcttcttcttttcttttcttttcttttttctttttttgcagga-aaattccacgtcttatttatttggtttttaaattgttatttgtag

upper sequence: LOC_Os05g39960.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA02G40660.1 (Glycine max), 5'ss of exon 3
GACAAGGCCATCAAGAGGTTCCAGGTGAGGAACATCGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaac---caatcttgctaagagctgtctcgttgtccgaaatctgtgtatggattgaacttttcgttgagccaaaaagaacatgttgtttttgttcag
|||||||||||||||||||| | |||||||||||| || || ||||| ||  |||| ||||| ||||| || || ||| ||||  |||||   | |  | | ||     |   |     |     |||||| ||||   | |  | || ||      ||||| || ||  | ||   |     
GACAAGGCCATCAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAACgtaactttctaattcgttatttttttcatgaaaatttcgcatctgtttatg---ttatttatttgtatttttaaaaaaaatattattttgcag-----

upper sequence: LOC_Os05g39960.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA06G14950.1 (Glycine max), 5'ss of exon 3
GACAAGGCCATCAAGAGGTTCCAGGTGAGGAACATCGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatcttgctaagagctgtctcgtt---gtccgaaatctgtgtatggattgaacttttcgttgagccaaaaagaacatgttgtttttgttcag
|||||||| ||||||||||| | |||||||||||| || || ||||| ||  |||| ||||| |||||||| || ||| ||||  ||||      |       | || |||  ||   ||        |||    | |||  || |    || |            |  |||||  | |  ||
GACAAGGCTATCAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTTCAGGAGGCTTGTGTCTATGAACgtaattttcttcttctttacctttcttttttctgtttttttgttgtaggagaattccacgtcctatttattttgttttttgaatttgttaatttgtag

upper sequence: LOC_Os05g39960.1 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv13s0067g02700.t01 (Vitis vinifera), 5'ss of exon 4
GACAAGGCCATCAAGAGGTTCCAGGTGAGGAACATCGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatcttgctaagagctgtctcgttgtccgaaatctgtgtatggattgaacttttcgttgagccaaaaagaacatgttgtttttgttcag
|||||||| |||||||||||   ||||||||||||||| ||||| || ||  | |||||||| |||||||| |||||| ||||| ||||  |  ||| ||         ||  || || | ||| |||        ||   ||||  |           |   ||    | | |||  ||
GACAAGGCAATCAAGAGGTTTTTGGTGAGGAACATCGTGGAGCAAGCTGCAGTGAGGGATGTTCAGGAGGCCTGCGTCTATGACAgtaattacacttcct---------ctttttttcggtaatttgtt------ctgtgttttttatctgatttgggggctaat----tctctgtgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88745168|gb|CI768528.1|CI768528
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88344573|gb|CI637182.1|CI637182
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACCTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|33673001|gb|CF301240.1|CF301240
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88732825|gb|CI756002.1|CI756002
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88582603|gb|CI700023.1|CI700023
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|58656602|gb|CK045282.1|CK045282
EST:     CGTGCGTCCATGACG                         T
genomic: CGTGCGTCCATGACGgtaaccaatc ... ttttgttcag-
EST: gi|58656602|gb|CK045282.1|CK045282
EST:     CGTGCGTCCATGACG                         T
genomic: CGTGCGTCCATGACGgtaaccaatc ... ttttgttcag-
EST: gi|88731774|gb|CI753494.1|CI753494
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88290626|gb|CI666999.1|CI666999
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88341380|gb|CI635578.1|CI635578
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88371711|gb|CI680817.1|CI680817
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88294257|gb|CI667231.1|CI667231
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88728521|gb|CI752031.1|CI752031
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88717091|gb|CI740601.1|CI740601
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88310420|gb|CI659210.1|CI659210
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88744313|gb|CI767673.1|CI767673
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|87006646|gb|CI295029.1|CI295029
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88735578|gb|CI759086.1|CI759086
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88310717|gb|CI672581.1|CI672581
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88333285|gb|CI642322.1|CI642322
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|325494070|gb|JG458594.1|JG458594
EST:     CGTCGAGCAGGCGGACATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCC
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCC
EST: gi|88290468|gb|CI665257.1|CI665257
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88341572|gb|CI641324.1|CI641324
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88330296|gb|CI658607.1|CI658607
EST:     CGTCGAGCAGGCGGNCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACCTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|325494587|gb|JG459111.1|JG459111
EST:     CGTCGAGCACGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCC
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCC
EST: gi|88452882|gb|CI574429.1|CI574429
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTTCAGGAGGCGTGCGTTCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88734616|gb|CI758124.1|CI758124
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|8859518|gb|AU096836.1|AU096836
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAA
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAA
EST: gi|88344564|gb|CI637173.1|CI637173
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88332889|gb|CI639737.1|CI639737
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|33659307|gb|CF281920.1|CF281920
EST:     GTCGAGCAGGCGGNCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: GTCGAGCAGGCGG-CCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88743449|gb|CI766957.1|CI766957
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|33673781|gb|CF302020.1|CF302020
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88382376|gb|CI633234.1|CI633234
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88348591|gb|CI634186.1|CI634186
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|33825638|gb|CF338632.1|CF338632
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88340758|gb|CI636918.1|CI636918
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88744906|gb|CI768266.1|CI768266
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88344156|gb|CI626700.1|CI626700
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88394466|gb|CI605807.1|CI605807
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88302196|gb|CI668042.1|CI668042
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88342871|gb|CI640204.1|CI640204
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88723313|gb|CI746823.1|CI746823
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCCTGC
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCC-TGC
EST: gi|88742314|gb|CI765822.1|CI765822
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88378907|gb|CI681729.1|CI681729
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88693067|gb|CI736642.1|CI736642
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|86906476|gb|CI294599.1|CI294599
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88570576|gb|CI661949.1|CI661949
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88400687|gb|CI596108.1|CI596108
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88734556|gb|CI758064.1|CI758064
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88723231|gb|CI746741.1|CI746741
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88587407|gb|CI705151.1|CI705151
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|86899956|gb|CI300082.1|CI300082
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88347436|gb|CI632721.1|CI632721
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88393730|gb|CI621225.1|CI621225
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88307818|gb|CI646253.1|CI646253
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88312271|gb|CI582609.1|CI582609
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88326531|gb|CI644634.1|CI644634
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88326013|gb|CI651061.1|CI651061
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88721116|gb|CI744415.1|CI744415
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88585543|gb|CI703185.1|CI703185
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|86888674|gb|CI305742.1|CI305742
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACACCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88360030|gb|CI608544.1|CI608544
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88695095|gb|CI739133.1|CI739133
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88739312|gb|CI762820.1|CI762820
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|55434460|gb|CV730354.1|CV730354
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88400908|gb|CI616913.1|CI616913
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88734944|gb|CI758452.1|CI758452
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88326284|gb|CI660105.1|CI660105
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88738786|gb|CI762294.1|CI762294
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88741737|gb|CI765245.1|CI765245
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88370909|gb|CI595021.1|CI595021
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|55413111|gb|CV725487.1|CV725487
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88735170|gb|CI758678.1|CI758678
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
EST: gi|88578930|gb|CI687892.1|CI687892
EST:     CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG                         GATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG
genomic: CGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 185

GACAAGGCCATCAAGAGGTTCCAGGTGAGGAACATCGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatc ... ttttgttcagGATACGTCCTCCCGAAGCTGTACGCCAAGGTCCATCACTGCGTCTCCTGCGCCATCCACGCCCACATCGTCCGTGTCCGCTCCCGCGAGAACCGCAGGGA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACAAGGCCATCAAGAGGTTCCAGGTGAGGAACATCGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACGgtaaccaatcttgctaagagctgtctcgttgtccgaaatctgtgtatggattgaacttttcgttgagccaaaaagaacatgttgtttttgttcag

- - - - - - - - - - - - - - - - - - -  GAGCAG