1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACAATGGCAACTTGGAGCAGTGGCTTCATGGCGACGTTGGACCGGTTAGCCCTCTGTCTTGGGACATCAGGATGAACATCGTGCTTGGGACAGCGAAAGGgtgggtgaactatcatcaatgcttccgattttctcgtcatgcattgatgcatcttcttaatttgcagcttttgattgtttttttttttgtgaaattgtgtgatatatctcaattttgggggttgacatggttcag
species | Oryza sativa |
transcript | LOC_Os05g36050.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCTCTGTCTTGGGACATCAGGATGAACATCGTGCTTGGGACAGCGAAAGG GATCACATATTTGCACGAGGGGCTGGAGCCGAAGGTGGTGCACCGGGACATEST: gi|58653268|gb|CK041948.1|CK041948
genomic: CCTCTGTCTTGGGACATCAGGATGAACATCGTGCTTGGGACAGCGAAAGGgtgggtgaac ... catggttcagGATCACATATTTGCACGAGGGGCTGGAGCCGAAGGTGGTGCACCGGGACAT
EST: CCTCTGTCTTGGGACATCAGGATGAACATCGTGCTTGGGACAGCGAAAGG GATCACATATTTGCACGAGGGGCTGGAGCCGAAGGTGGTGCACCGGGACATEST: gi|58599417|gb|CK009945.1|CK009945
genomic: CCTCTGTCTTGGGACATCAGGATGAACATCGTGCTTGGGACAGCGAAAGGgtgggtgaac ... catggttcagGATCACATATTTGCACGAGGGGCTGGAGCCGAAGGTGGTGCACCGGGACAT
EST: CCTCTGTCTTGGGACATCAGGATGAACATCGTGCTTGGGACAGCGAAAGG GATCACATATTTGCACGAGGGGCTGGAGCCGAAGGTGGTGCACCGGGACATEST: gi|58665151|gb|CK053837.1|CK053837
genomic: CCTCTGTCTTGGGACATCAGGATGAACATCGTGCTTGGGACAGCGAAAGGgtgggtgaac ... catggttcagGATCACATATTTGCACGAGGGGCTGGAGCCGAAGGTGGTGCACCGGGACAT
EST: CCTCTGTCTTGGGACATCAGGATGAACATCGTGCTTGGGACAGCGAAAGG GATCACATATTTGCACGAGGGGCTGGAGCCGAAGGTGGTGCACCGGGACAT
genomic: CCTCTGTCTTGGGACATCAGGATGAACATCGTGCTTGGGACAGCGAAAGGgtgggtgaac ... catggttcagGATCACATATTTGCACGAGGGGCTGGAGCCGAAGGTGGTGCACCGGGACAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAATGGCAACTTGGAGCAGTGGCTTCATGGCGACGTTGGACCGGTTAGCCCTCTGTCTTGGGACATCAGGATGAACATCGTGCTTGGGACAGCGAAAGGgtgggtgaactatcatcaatgcttccgattttctcgtcatgcattgatgcatcttcttaatttgcagcttttgattgtttttttttttgtgaaattgtgtgatatatctcaattttgggggttgacatggttcag
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