1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACAACGGCAATCTTGATCAATGGCTTCATGGTGATGTAGGGGAAGTGAGCCCACTAACTTGGGAAGTCAGGATGAACATAATTCTTGGAACTGCTAAAGGgtaatgcttctctcactgttgcacgccaattttgccaaagtgggtaccttgaacagtgttatattggtatgccttgcctgattctgtttaatacttcgac...
species | Oryza sativa |
transcript | LOC_Os03g03410.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCACTAACTTGGGAAGTCAGGATGAACATAATTCTTGGAACTGCTAAAGG GCTGGCCTATCTTCATGAGGGGCTGGAACCGAAGGTTGTCCATCGTGACATEST: gi|58680434|gb|CK069121.1|CK069121
genomic: CCACTAACTTGGGAAGTCAGGATGAACATAATTCTTGGAACTGCTAAAGGgtaatgcttc ... tgctctctagGCTGGCCTATCTTCATGAGGGGCTGGAACCGAAGGTTGTCCATCGTGACAT
EST: CCACTAACTTGGGAAGTCAGGATGAACATAATTCTTGGAACTGCTAAAGG GCTGGCCTATCTTCATGAGTGGGCTAGAACCGAAGGTTGTCCATCGTGACAEST: gi|38480926|gb|CF965015.1|CF965015
genomic: CCACTAACTTGGGAAGTCAGGATGAACATAATTCTTGGAACTGCTAAAGGgtaatgcttc ... tgctctctagGCTGGCCTATCTTCATGAG-GGGCTGGAACCGAAGGTTGTCCATCGTGACA
EST: CCACTAACTTGGGAAGTCAGGATGAACATAATTCTTGGAACTGCTAAAGG GCTGGCCTATCTTCATGAGGGGCTAGAACCGAAGGTTGTCCATCGTGACATEST: gi|58687074|gb|CK075761.1|CK075761
genomic: CCACTAACTTGGGAAGTCAGGATGAACATAATTCTTGGAACTGCTAAAGGgtaatgcttc ... tgctctctagGCTGGCCTATCTTCATGAGGGGCTGGAACCGAAGGTTGTCCATCGTGACAT
EST: CCACTAACTTGGGAAGTCAGGATGAACATAATTCTTGGAACTGCTAAAGG GCTGGCCTATCTTCATGAGGGGCTAGAACCGAAGGTTGTCCATCGTGACATEST: gi|38477229|gb|CF961362.1|CF961362
genomic: CCACTAACTTGGGAAGTCAGGATGAACATAATTCTTGGAACTGCTAAAGGgtaatgcttc ... tgctctctagGCTGGCCTATCTTCATGAGGGGCTGGAACCGAAGGTTGTCCATCGTGACAT
EST: CCACTAACTTGGGAAGTCAGGATGAACATAGTTCTTGGAACTGCTAAAGG GCTGGCCTATCTTCATGAGGGGCTAGAACCGAAGGTTGTCCATCGTGACATEST: gi|58680836|gb|CK069523.1|CK069523
genomic: CCACTAACTTGGGAAGTCAGGATGAACATAATTCTTGGAACTGCTAAAGGgtaatgcttc ... tgctctctagGCTGGCCTATCTTCATGAGGGGCTGGAACCGAAGGTTGTCCATCGTGACAT
EST: CCACTAACTTGGGAAGTCAGGATGAACATAATTCTTGGAACTGCTAAAGG GCTGGCCTATCTTCATGAGEST: gi|58588930|gb|CF987238.1|CF987238
genomic: CCACTAACTTGGGAAGTCAGGATGAACATAATTCTTGGAACTGCTAAAGGgtaatgcttc ... tgctctctagGCTGGCCTATCTTCATGAG
EST: CCACTAACTTGGGAAGTCAGGATGAACATAATTCTTGGAACTGCTAAAGG GCTGGCCTATCTTCATGAGGGGCTAGAACCGAAGGTTGTCCATCGTGACATEST: gi|58694780|gb|CK083467.1|CK083467
genomic: CCACTAACTTGGGAAGTCAGGATGAACATAATTCTTGGAACTGCTAAAGGgtaatgcttc ... tgctctctagGCTGGCCTATCTTCATGAGGGGCTGGAACCGAAGGTTGTCCATCGTGACAT
EST: CCACTAACTTGGGAAGTCAGGATGAGCATAATTCTTGGAACTGCTAAAGG GCTGGCCTATCTTCATGAGGGGCTAGAACCGAAGGTTGTCCATCGTGACATEST: gi|300215530|gb|HO088156.1|HO088156
genomic: CCACTAACTTGGGAAGTCAGGATGAACATAATTCTTGGAACTGCTAAAGGgtaatgcttc ... tgctctctagGCTGGCCTATCTTCATGAGGGGCTGGAACCGAAGGTTGTCCATCGTGACAT
EST: CCACTAACTTGGGAAGTCAGGATGAACATAATTCTTGGAACTGCTAAAGG GCTGGCCTATCTTCATGAGGGGCTAGAACCGAAGGTTGTCCATCGTGACATEST: gi|58693941|gb|CK082628.1|CK082628
genomic: CCACTAACTTGGGAAGTCAGGATGAACATAATTCTTGGAACTGCTAAAGGgtaatgcttc ... tgctctctagGCTGGCCTATCTTCATGAGGGGCTGGAACCGAAGGTTGTCCATCGTGACAT
EST: CTAACTTGTGGAAGTCAGTGATGAACATAATTCTTGGAACTGCTAAAGTG GCTGGCCTATCTTCATGAGGGGCTAGAACCGAAGGTTGTCCATCGTGACAEST: gi|58688663|gb|CK077350.1|CK077350
genomic: CTAACTTG-GGAAGTCAG-GATGAACATAATTCTTGGAACTGCTAAAG-Ggtaatgcttc ... tgctctctagGCTGGCCTATCTTCATGAGGGGCTGGAACCGAAGGTTGTCCATCGTGACA
EST: CCACTAACTTGGGAAGTCAGGATGAACATAATTCTTGGAACTGCTAAAGG GCTGGCCTATCTTCATGAGGGGCTAGAACCGAAGGTTGTCCATCGTGACAT
genomic: CCACTAACTTGGGAAGTCAGGATGAACATAATTCTTGGAACTGCTAAAGGgtaatgcttc ... tgctctctagGCTGGCCTATCTTCATGAGGGGCTGGAACCGAAGGTTGTCCATCGTGACAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAACGGCAATCTTGATCAATGGCTTCATGGTGATGTAGGGGAAGTGAGCCCACTAACTTGGGAAGTCAGGATGAACATAATTCTTGGAACTGCTAAAGGgtaatgcttctctcactgttgcacgccaattttgccaaagtgggtaccttgaacagtgttatattggtatgccttgcctgattctgtttaatacttcgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttctctc