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GGCAATGAACAAGCTACTTATGGAAGAGAATGAGCGACTCCAGAAGCAGGTCTCCCAATTGGTTCATGAGAATGCCCACATGCGACAGCAGCTGCAGAATgtaagctcttgatgtgctggtgctgatgttgtcccccatgcataaacatgttctcactgaaatgctatctattctttgtgcattttgttatacgcatggc...
species | Oryza sativa |
transcript | LOC_Os03g01890.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCTCCCAATTGGTTCATGAGAATGCCCACATGCGACAGCAGCTGCAGAAT ACTCCGCTGGCAAATGATACAAGCTGTGAATCAAATGTGACTACCCCTCAAEST: gi|29642722|gb|CB647729.1|CB647729
genomic: TCTCCCAATTGGTTCATGAGAATGCCCACATGCGACAGCAGCTGCAGAATgtaagctctt ... ttgggtgcagACTCCGCTGGCAAATGATACAAGCTGTGAATCAAATGTGACTACCCCTCAA
EST: TCTCCCAATTGGTTCATGAGAATGCCCACATGCGACAGCAGCTGCAGAAT ACTCCGCTGGCAAATGATACAAGCTGTGAATCAAATGTGACTACCCCTCAAEST: gi|58663402|gb|CK052088.1|CK052088
genomic: TCTCCCAATTGGTTCATGAGAATGCCCACATGCGACAGCAGCTGCAGAATgtaagctctt ... ttgggtgcagACTCCGCTGGCAAATGATACAAGCTGTGAATCAAATGTGACTACCCCTCAA
EST: TCTCCCAATTGGTTCATGAGAATGCTCACATGCGACAGCAGCTGCAGAAT ACTCCGCTGGCAAATGATACAAGCTGTGAATCAAATGTGACTACCCCTCAAEST: gi|29678473|gb|CB674748.1|CB674748
genomic: TCTCCCAATTGGTTCATGAGAATGCCCACATGCGACAGCAGCTGCAGAATgtaagctctt ... ttgggtgcagACTCCGCTGGCAAATGATACAAGCTGTGAATCAAATGTGACTACCCCTCAA
EST: TCTCCCAATTGGTTCATGAGAATGCCCACATGCGACAGCAGCTGCAGAAT ACTCCGCTGGCAAATGATACAAGCTGTGAATCAAATGTEST: gi|88205580|gb|CI205429.1|CI205429
genomic: TCTCCCAATTGGTTCATGAGAATGCCCACATGCGACAGCAGCTGCAGAATgtaagctctt ... ttgggtgcagACTCCGCTGGCAAATGATACAAGCTGTGAATCAAATGT
EST: TCTCCCAATTGGTTCATGAGAATGCCCACATGCGACAGCAGCTGCAGAAT ACTCCGCTGGCAAATGATACAAGCTGTGAATCAAATGTGACTACCCCTCAAEST: gi|29678474|gb|CB674749.1|CB674749
genomic: TCTCCCAATTGGTTCATGAGAATGCCCACATGCGACAGCAGCTGCAGAATgtaagctctt ... ttgggtgcagACTCCGCTGGCAAATGATACAAGCTGTGAATCAAATGTGACTACCCCTCAA
EST: TCTCCCAATTGGTTCATGAGAATGCCCACATGCGACAGCAGCTGCAGAAT ACTCCGCTGGCAAATGATACAAGCTGTGAATCAAATGTGACTACCCCTCAA
genomic: TCTCCCAATTGGTTCATGAGAATGCCCACATGCGACAGCAGCTGCAGAATgtaagctctt ... ttgggtgcagACTCCGCTGGCAAATGATACAAGCTGTGAATCAAATGTGACTACCCCTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCAATGAACAAGCTACTTATGGAAGAGAATGAGCGACTCCAGAAGCAGGTCTCCCAATTGGTTCATGAGAATGCCCACATGCGACAGCAGCTGCAGAATgtaagctcttgatgtgctggtgctgatgttgtcccccatgcataaacatgttctcactgaaatgctatctattctttgtgcattttgttatacgcatggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtccccc