1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CAAATTCCATTTTATCCATGAAGCTGTAACTATATTAATGGATACCACAATTCTGTACTATAGAGTTCTTCCCTGGGTTTGGAAGgtaaaacaaaatcaatcagcttgcctctgtaaactctttatgcaagtattttgttgtgattagccttcttttgtag
species | Oryza sativa |
transcript | LOC_Os02g45650.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TAATGGATACCACAATTCTGTACTATAGAGTTCTTCCCTGGGTTTGGAAG AAATCTGGAGAGCTAGCAACCAATGCTGGCCTAAATGCTGAAAATGAGATAEST: gi|88732275|gb|CI757123.1|CI757123
genomic: TAATGGATACCACAATTCTGTACTATAGAGTTCTTCCCTGGGTTTGGAAGgtaaaacaaa ... tcttttgtagAAATCTGGAGAGCTAGCAACCAATGCTGGCCTAAATGCTGAAAATGAGATA
EST: TAATGGATACCACAATTCTGTACTATAGAGTTCTTCCCTGGGTTTGGAAG AAATCTGGAGAGCTAGCAACCAATGCTEST: gi|58671695|gb|CK060381.1|CK060381
genomic: TAATGGATACCACAATTCTGTACTATAGAGTTCTTCCCTGGGTTTGGAAGgtaaaacaaa ... tcttttgtagAAATCTGGAGAGCTAGCAACCAATGCT
EST: TAATGGATACCACAACTCTGTACTATAGAGTTCTTCCCTGGGTTTGGAAG AAATCTGGAGAGCTAGCAACCAATGCTGGCCTAAATGCTGAAAATGAGATAEST: gi|88722297|gb|CI745807.1|CI745807
genomic: TAATGGATACCACAATTCTGTACTATAGAGTTCTTCCCTGGGTTTGGAAGgtaaaacaaa ... tcttttgtagAAATCTGGAGAGCTAGCAACCAATGCTGGCCTAAATGCTGAAAATGAGATA
EST: TAATGGATACCACAATTCTGTACTATAGAGTTCTTCCCTGGGTTTGGAAG AAATCTGGAGAGCTAGEST: gi|88737616|gb|CI761124.1|CI761124
genomic: TAATGGATACCACAATTCTGTACTATAGAGTTCTTCCCTGGGTTTGGAAGgtaaaacaaa ... tcttttgtagAAATCTGGAGAGCTAG
EST: TAATGGATACCACAATTCTGTACTATAGAGTTCTTCCCTGGGTTTGGAAG AAATCTGGAGAGCTAGCAACCAATGCTGGCCTAAATGCTGAAAATGAGATAEST: gi|88394689|gb|CI622563.1|CI622563
genomic: TAATGGATACCACAATTCTGTACTATAGAGTTCTTCCCTGGGTTTGGAAGgtaaaacaaa ... tcttttgtagAAATCTGGAGAGCTAGCAACCAATGCTGGCCTAAATGCTGAAAATGAGATA
EST: TAATGGATACCACAATTCTGTACTATAGAGTTCTTCCCTGGGTTTGGAAG AAATCTGGAGAGCTAGCAACCAATGCTGGCCTAAATGCTGAAAATGAGATAEST: gi|88760844|gb|CI770400.1|CI770400
genomic: TAATGGATACCACAATTCTGTACTATAGAGTTCTTCCCTGGGTTTGGAAGgtaaaacaaa ... tcttttgtagAAATCTGGAGAGCTAGCAACCAATGCTGGCCTAAATGCTGAAAATGAGATA
EST: TAATGGATACCACAATTCTGTACTATAGAGTTCTTCCCTGGGTTTGGAAG AAATCTGGAGAGCTAGCAACCAATGCTGGCCTAAATGCTGAAAATGAGATAEST: gi|58678385|gb|CK067072.1|CK067072
genomic: TAATGGATACCACAATTCTGTACTATAGAGTTCTTCCCTGGGTTTGGAAGgtaaaacaaa ... tcttttgtagAAATCTGGAGAGCTAGCAACCAATGCTGGCCTAAATGCTGAAAATGAGATA
EST: TAATGGATACCACAATTCTGTACTATAGAGTTCTTCCCTGGGTTTGGAAG AAATCTGGAGAGCTAGCAACCAATGCTGGCCTAAATGCTGAAAATGAGATAEST: gi|58678409|gb|CK067096.1|CK067096
genomic: TAATGGATACCACAATTCTGTACTATAGAGTTCTTCCCTGGGTTTGGAAGgtaaaacaaa ... tcttttgtagAAATCTGGAGAGCTAGCAACCAATGCTGGCCTAAATGCTGAAAATGAGATA
EST: TAATGGATACCACAATTCTGTACTATAGAGTTCTTCCCTGGGTTTGGAAG AAATCTGGAGAGCTAGCAACCAATGCTGGCCTAAATGCTGAAAATGAGATAEST: gi|58686372|gb|CK075059.1|CK075059
genomic: TAATGGATACCACAATTCTGTACTATAGAGTTCTTCCCTGGGTTTGGAAGgtaaaacaaa ... tcttttgtagAAATCTGGAGAGCTAGCAACCAATGCTGGCCTAAATGCTGAAAATGAGATA
EST: TAATGGATACCACAATTCTGTACTATAGAGTTCTTCCCTGGGTTTGGAAG AAATCTGGAGAGCTAGCAACCAATGCTGGCCTAAATGCTGAAAATGAGATAEST: gi|58683468|gb|CK072155.1|CK072155
genomic: TAATGGATACCACAATTCTGTACTATAGAGTTCTTCCCTGGGTTTGGAAGgtaaaacaaa ... tcttttgtagAAATCTGGAGAGCTAGCAACCAATGCTGGCCTAAATGCTGAAAATGAGATA
EST: TAATGGATACCACAATTCTGTACTATAGAGTTCTTCCCTGGGTTTGGAAG AAATCTGGAGAGCTAGCAACCAATGCTGGCCTAAATGCTGAAAATGAGATAEST: gi|58664452|gb|CK053138.1|CK053138
genomic: TAATGGATACCACAATTCTGTACTATAGAGTTCTTCCCTGGGTTTGGAAGgtaaaacaaa ... tcttttgtagAAATCTGGAGAGCTAGCAACCAATGCTGGCCTAAATGCTGAAAATGAGATA
EST: TAATGGATACCACAATTCTGTACTATAGAGTTCTTCCCTGGGTTTGGAAG AAATCTGGAGAGCTAGCAACCAATGCTGGCCTAAATGCTGAAAATGAGATAEST: gi|88824982|gb|CI775547.1|CI775547
genomic: TAATGGATACCACAATTCTGTACTATAGAGTTCTTCCCTGGGTTTGGAAGgtaaaacaaa ... tcttttgtagAAATCTGGAGAGCTAGCAACCAATGCTGGCCTAAATGCTGAAAATGAGATA
EST: TAATGGATACCACAATTCTGTACTATAGAGTTCTTCCCTGGGTTTGGAAG AAATCTGGAGAGCTAGCAACCAATGCTGGCCTAAATGCTGAAAATGAGATAEST: gi|58589625|gb|CF987933.1|CF987933
genomic: TAATGGATACCACAATTCTGTACTATAGAGTTCTTCCCTGGGTTTGGAAGgtaaaacaaa ... tcttttgtagAAATCTGGAGAGCTAGCAACCAATGCTGGCCTAAATGCTGAAAATGAGATA
EST: AAGTGGATACCACAATTCGGTACTATAGAGTTCTTCCCTGGGTTTGGAAG AAATCTGGAGAGCTAGCAACCAATGCTGGCCTAAATGCTGAAAATGAGATAEST: gi|58657010|gb|CK045690.1|CK045690
genomic: AA-TGGATACCACAATTCTGTACTATAGAGTTCTTCCCTGGGTTTGGAAGgtaaaacaaa ... tcttttgtagAAATCTGGAGAGCTAGCAACCAATGCTGGCCTAAATGCTGAAAATGAGATA
EST: TAATGGATACCACAATTCTGTACTATAGAGTTCTTCCCTGGGTTTGGAAG AAATCTGGAGAGCTAGCAACCAATGCTGGCCTAAATGCTGAAAATGAGATA
genomic: TAATGGATACCACAATTCTGTACTATAGAGTTCTTCCCTGGGTTTGGAAGgtaaaacaaa ... tcttttgtagAAATCTGGAGAGCTAGCAACCAATGCTGGCCTAAATGCTGAAAATGAGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAATTCCATTTTATCCATGAAGCTGTAACTATATTAATGGATACCACAATTCTGTACTATAGAGTTCTTCCCTGGGTTTGGAAGgtaaaacaaaatcaatcagcttgcctctgtaaactctttatgcaagtattttgttgtgattagccttcttttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG