1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TATTCGTTGTTTGTTTCTCAGAAGCACTAATACATAGTTATATGCAAATTCAGGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAGgtaaccttttacattggcttcattgttggaatacatttctattttgtatatattatggttgtcatgtacatgctattgtgagttattccaacttgttatt...
species | Oryza sativa |
transcript | LOC_Os02g42320.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG TGGGATGGGTCCCGATTTCCGTGTTCTTGTGAGAAAAAGTCGGAAACAAGCEST: gi|27576119|gb|CA998813.1|CA998813
genomic: GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAGgtaacctttt ... cttctttcagTGGGATGGGTCCCGATTTCCGTGTTCTTGTGAGAAAAAGTCGGAAACAAGC
EST: GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG TGGGATGGGTCCCGATTTCCGTGTTCTTGTGAGAAAAAGTCGGAAACAAGCEST: gi|86493119|gb|CI135752.1|CI135752
genomic: GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAGgtaacctttt ... cttctttcagTGGGATGGGTCCCGATTTCCGTGTTCTTGTGAGAAAAAGTCGGAAACAAGC
EST: CTCCGAACATTGGAGTTGTCTACAG TGGGATGGGTCCCGATTTCCGTGTTCTTGTGAGAAAAAGTCGGAAACAAGCEST: gi|396941624|gb|HO188281.1|HO188281
genomic: CTCCGAACATTGGAGTTGTCTACAGgtaacctttt ... cttctttcagTGGGATGGGTCCCGATTTCCGTGTTCTTGTGAGAAAAAGTCGGAAACAAGC
EST: AAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG TGGGATGGGTCCCGATTTCCGTGTTCTTGTGAGAAAAAGTCGGAAACAAGCEST: gi|25797837|gb|CA753798.1|CA753798
genomic: AAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAGgtaacctttt ... cttctttcagTGGGATGGGTCCCGATTTCCGTGTTCTTGTGAGAAAAAGTCGGAAACAAGC
EST: AAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG TGGGATGGGTCCCGATTTCCGTGTTCTTGTGAGAAAAAGTCGGAAACAAGCEST: gi|56550165|gb|CX056269.1|CX056269
genomic: AAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAGgtaacctttt ... cttctttcagTGGGATGGGTCCCGATTTCCGTGTTCTTGTGAGAAAAAGTCGGAAACAAGC
EST: GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG TGGGATGGGTCCCGATTTCCGTGTTCTTGTGAGAAAAAGTCGGAAACAAGC
genomic: GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAGgtaacctttt ... cttctttcagTGGGATGGGTCCCGATTTCCGTGTTCTTGTGAGAAAAAGTCGGAAACAAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTCGTTGTTTGTTTCTCAGAAGCACTAATACATAGTTATATGCAAATTCAGGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAGgtaaccttttacattggcttcattgttggaatacatttctattttgtatatattatggttgtcatgtacatgctattgtgagttattccaacttgttatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG