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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGACGCTGGTGTTCTACACCGGAAGGGCCCCGCACGGCAAGAAGACCGACTGGATCATGCACGAGTACCGCCTCGACGACGACAATGTCGACGTCCCGgtaagcaccatcaccattctaatcgatttcaagctagatagtttagatcaagtagagttgagctctgattaatggcggtttcttggaatgttgcattggatgcgtgcag

Basic information

species Oryza sativa
transcript LOC_Os02g15340.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g15340.1 (Oryza sativa), 5'ss of exon 3
lower sequence: PP1S77_42V6.1 (Physcomitrella patens), 5'ss of exon 2
GAAGACGCTGGTGTTCTACACCGGAAGGGCCCCGCACGGCAAGAAGACCGACTGGATCATGCACGAGTACCGCCTCGACGACGACAATGTCGACGTCC-CGgtaagcaccatcaccattctaatcgatttcaagctagatagtttagatcaagtagagttgagctctgattaatggcggtttcttggaatg-ttgcattgga--tgcgtgcag--
         |||||||||||  ||  |||| || || ||| ||||||||||||||||||||||||||| ||| || ||||||| |||    |   ||| ||||    |    |  |    |     ||||| | |    |      | ||  ||          |  ||| | ||  |  ||    ||| | |||| | |||  |||   |||  
---------GGTGTTCTACAAGGGCCGGGCGCCTCATGGCCAGAAGACCGACTGGATCATGCACGAGTTCCGTCTAGACGACGGCAACCAGGCATTCCGCGGTTTCGATgtacgtcgccgttccacatttccaaccccctcacagtgttcgtgtccc------tttcgatcagtgttgcattaccagaaagcttgcctcggagatgctcccagat

upper sequence: LOC_Os02g15340.1 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ22020 (Selaginella moellendorffii), 5'ss of exon 2
GAAGACGCTGGTGTTCTACACCGGAAGGGCCCCGCACGGCAAGAAGACCGACTGGATCATGCACGAGTACCGCCTCGACGACGACAATGTCGACGTCCCGgtaagcaccatcaccattctaatcgatttcaagctagatagtttagatcaagtagagttgagctctgattaatggcggttt---cttggaatgttgcattggatgcgtgcag
             |||||||  || || || ||  ||||  ||||||||||||||||||||||||||||| | ||||| || ||||   ||  |  |   |  |||| || ||  ||   |     | ||   || |  || ||   ||   || |      |||| |||  |   | |||     || ||||  |                
------------TTTCTACAGAGGGAGAGCTCCAAACGGGCAGAAGACCGACTGGATCATGCACGAGTACAGGCTCGAGGAGGACA---TCAGCAGCAGTGGCAGCAACAACA--ATgtaagatcctctcgtacttggcagcttttttcttctataacc---ctcttatttttttggttttggctctgaaatgcag----------------