1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTGCGCTTACCGGATGGCTGTGCAGAAAGACCAGTATTGTCAAGAGATGTACAATTCTTACAAAGCAACACATGAAAGTTGCGTCTGTGCAATGgtactacagtactagactgttgctagtttttaaatccacaatgtcatatttctagacatagccaagtaagtttattgtgttgcataatgatgattgaaat...
species | Oryza sativa |
transcript | LOC_Os01g70920.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGATGTACAATTCTTACAAAGCAACACATGAAAGTTGCGTCTGTGCAATG GTTTTACCCCATCTGATGCATAAGCAAGGTGACTTATTTTGGAGAGAGCTTEST: gi|58661584|gb|CK050264.1|CK050264
genomic: AGATGTACAATTCTTACAAAGCAACACATGAAAGTTGCGTCTGTGCAATGgtactacagt ... atgtatttagGTTTTACCCCATCTGATGCATAAGCAAGGTGACTTATTTTGGAGAGAGCTT
EST: AGATGTACAATTCTTACAAAGCAACACATGAAAGTTGCGTCTGTGCAATG GTTTTACCCCATCTGATGCATAAGCAAGGTGACTTATTTTGGAGAGAGCTTEST: gi|88569821|gb|CI660996.1|CI660996
genomic: AGATGTACAATTCTTACAAAGCAACACATGAAAGTTGCGTCTGTGCAATGgtactacagt ... atgtatttagGTTTTACCCCATCTGATGCATAAGCAAGGTGACTTATTTTGGAGAGAGCTT
EST: AGATGTACAATTCTTACAAAGCAACACATGAAAGTTGCGTCTGTGCAATG GTTTTACCCCATCTGAT
genomic: AGATGTACAATTCTTACAAAGCAACACATGAAAGTTGCGTCTGTGCAATGgtactacagt ... atgtatttagGTTTTACCCCATCTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGCGCTTACCGGATGGCTGTGCAGAAAGACCAGTATTGTCAAGAGATGTACAATTCTTACAAAGCAACACATGAAAGTTGCGTCTGTGCAATGgtactacagtactagactgttgctagtttttaaatccacaatgtcatatttctagacatagccaagtaagtttattgtgttgcataatgatgattgaaat
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